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Table 3 The list of 36 best North Eurasian SNPs for eye color prediction

From: Optimizing the genetic prediction of the eye and hair color for North Eurasian populations

SNP_ID Caucasus Score European Russia Score West Siberia Score Pooled Dataset Score HIrisPlex-S dbSNP RSID Gene
chr15:28356859_C_T 2 2 2 3 rs1129038 rs1129038 HERC2
chr15:28365618_A_G 2 2 2 3 rs12913832 rs12913832;4745 HERC2
chr15:28392261_G_A 2 2   3   rs12898729 HERC2
chr15:28410491_C_T   2 2 3   rs12916300 HERC2
chr15:28495956_A_G   2 2 3   rs12912427 HERC2
chr15:28562998_T_C   1   2   rs1614575 HERC2
chr20:39272620_A_G   1   2   rs4812447 Intergene spacer
chr1:119406130_C_T     2   rs1779446 Intergene spacer
chr1:3331899_A_G     2   rs1999528 PRDM16
chr15:28145024_T_C     2   rs2871886 OCA2
chr15:28364059_A_G     2   rs7494942 HERC2
chr15:28380518_T_A     2   rs4778249 HERC2
chr15:28383565_T_C     2   rs7403279 HERC2
chr15:28513364_T_C     2   rs916977;4744 HERC2
chr15:28530182_C_T     2 rs1667394 rs1667394;4743 HERC2
chr15:28566122_A_G     2   rs751089833 HERC2
chr19:7570978_T_C     2   rs685034 C19orf45
chr3:189429301_G_T     2   rs6804480 TP63
chr6:45136347_G_A     2   rs1324530 SUPT3H
chrX:66405249_C_T     2   rs34191540 Intergene spacer
chr10:87576467_C_T     1   rs7923503 GRID1
chr14:92909309_T_C     1   rs12588868 SLC24A4
chr15:28419048_T_G     1   rs35946704 HERC2
chr17:9107969_G_A     1   rs17742781 NTN1
chr19:7578733_A_T     1   rs586243 ZNF358
chr3:189552236_T_C     1   rs7653443 MIR944
chr3:33035542_T_C     1   rs4586761 GLB1
chr3:33111182_T_G     1   rs72856153 GLB1
chr3:54251172_G_A     1   rs11283625 CACNA2D3
chr3:54636061_G_A     1   rs34983676 CACNA2D3
chr4:87847613_T_G   1   1   rs10022539 LOC100506746
chr4:87851083_C_T     1   rs72667724 LOC100506746
chr5:60947483_A_G     1   rs1501841 C5orf64
chr5:73959526_A_G     1   rs2454846 HEXB
chr6:45419110_C_G     1   rs2820339 RUNX2
chr7:42032565_C_T     1   rs2237427 GLI3
  1. Indicated in bold - new SNPs which demonstrated the high prediction power for the eye color
  2. Columns: SNP_ID – SNP ID in format: chromosome:position in GRCh37_allele 1_allele 2. Caucasus score, European Russia Score, West Siberia Score, Pooled Dataset Score – scores as described in section “Eye color prediction” for corresponding datasets
  3. HIrisPlex-S – RS ID if used in HIrisPlex-S. Otherwise empty
  4. dbSNP RSID – RS ID in dbSNP database
  5. Gene – Nearest gene for this SNP