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Table 3 The list of 36 best North Eurasian SNPs for eye color prediction

From: Optimizing the genetic prediction of the eye and hair color for North Eurasian populations

SNP_ID

Caucasus Score

European Russia Score

West Siberia Score

Pooled Dataset Score

HIrisPlex-S

dbSNP RSID

Gene

chr15:28356859_C_T

2

2

2

3

rs1129038

rs1129038

HERC2

chr15:28365618_A_G

2

2

2

3

rs12913832

rs12913832;4745

HERC2

chr15:28392261_G_A

2

2

 

3

 

rs12898729

HERC2

chr15:28410491_C_T

 

2

2

3

 

rs12916300

HERC2

chr15:28495956_A_G

 

2

2

3

 

rs12912427

HERC2

chr15:28562998_T_C

 

1

 

2

 

rs1614575

HERC2

chr20:39272620_A_G

 

1

 

2

 

rs4812447

Intergene spacer

chr1:119406130_C_T

   

2

 

rs1779446

Intergene spacer

chr1:3331899_A_G

   

2

 

rs1999528

PRDM16

chr15:28145024_T_C

   

2

 

rs2871886

OCA2

chr15:28364059_A_G

   

2

 

rs7494942

HERC2

chr15:28380518_T_A

   

2

 

rs4778249

HERC2

chr15:28383565_T_C

   

2

 

rs7403279

HERC2

chr15:28513364_T_C

   

2

 

rs916977;4744

HERC2

chr15:28530182_C_T

   

2

rs1667394

rs1667394;4743

HERC2

chr15:28566122_A_G

   

2

 

rs751089833

HERC2

chr19:7570978_T_C

   

2

 

rs685034

C19orf45

chr3:189429301_G_T

   

2

 

rs6804480

TP63

chr6:45136347_G_A

   

2

 

rs1324530

SUPT3H

chrX:66405249_C_T

   

2

 

rs34191540

Intergene spacer

chr10:87576467_C_T

   

1

 

rs7923503

GRID1

chr14:92909309_T_C

   

1

 

rs12588868

SLC24A4

chr15:28419048_T_G

   

1

 

rs35946704

HERC2

chr17:9107969_G_A

   

1

 

rs17742781

NTN1

chr19:7578733_A_T

   

1

 

rs586243

ZNF358

chr3:189552236_T_C

   

1

 

rs7653443

MIR944

chr3:33035542_T_C

   

1

 

rs4586761

GLB1

chr3:33111182_T_G

   

1

 

rs72856153

GLB1

chr3:54251172_G_A

   

1

 

rs11283625

CACNA2D3

chr3:54636061_G_A

   

1

 

rs34983676

CACNA2D3

chr4:87847613_T_G

 

1

 

1

 

rs10022539

LOC100506746

chr4:87851083_C_T

   

1

 

rs72667724

LOC100506746

chr5:60947483_A_G

   

1

 

rs1501841

C5orf64

chr5:73959526_A_G

   

1

 

rs2454846

HEXB

chr6:45419110_C_G

   

1

 

rs2820339

RUNX2

chr7:42032565_C_T

   

1

 

rs2237427

GLI3

  1. Indicated in bold - new SNPs which demonstrated the high prediction power for the eye color
  2. Columns: SNP_ID – SNP ID in format: chromosome:position in GRCh37_allele 1_allele 2. Caucasus score, European Russia Score, West Siberia Score, Pooled Dataset Score – scores as described in section “Eye color prediction” for corresponding datasets
  3. HIrisPlex-S – RS ID if used in HIrisPlex-S. Otherwise empty
  4. dbSNP RSID – RS ID in dbSNP database
  5. Gene – Nearest gene for this SNP
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