From: GLaMST: grow lineages along minimum spanning tree for b cell receptor sequencing data
Simulation | Seq Length | Mutation Distribution (mutation, insertion, deletion) | IgTree | dnapars | GLaMST | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Larger | Same | Smaller | Success | Larger | Same | Smaller | Success | Larger | Same | Smaller | Success | |||
1 | 300 | (1.00, 0.00, 0.00) | 10 | 469 | 21 | 98% | 0 | 480 | 20 | 100% | 6 | 473 | 21 | 99% |
2 | 300 | (0.98, 0.01, 0.01) | 12 | 468 | 20 | 98% | 3 | 477 | 20 | 99% | 7 | 472 | 21 | 99% |
3 | 300 | (0.90, 0.05, 0.05) | 54 | 424 | 22 | 89% | 34 | 444 | 22 | 93% | 11 | 464 | 25 | 98% |
4 | 80 | (1.00, 0.00, 0.00) | 39 | 390 | 71 | 92% | 1 | 420 | 79 | 100% | 38 | 391 | 71 | 92% |
5 | 80 | (0.98, 0.01, 0.01) | 71 | 373 | 56 | 86% | 20 | 416 | 64 | 96% | 28 | 414 | 58 | 94% |
6 | 80 | (0.90, 0.05, 0.05) | 130 | 325 | 45 | 74% | 103 | 345 | 52 | 79% | 26 | 412 | 62 | 95% |
7 | 20 | (1.00, 0.00, 0.00) | 77 | 234 | 189 | 85% | 8 | 241 | 251 | 98% | 46 | 251 | 203 | 91% |
8 | 20 | (0.98, 0.01, 0.01) | 116 | 201 | 183 | 77% | 54 | 221 | 225 | 89% | 35 | 236 | 229 | 93% |
9 | 20 | (0.90, 0.05, 0.05) | 278 | 129 | 93 | 44% | 234 | 153 | 113 | 53% | 47 | 255 | 198 | 91% |