Table 2 Comparison of 12 tree features based on real data
From: GLaMST: grow lineages along minimum spanning tree for b cell receptor sequencing data
Description | IgTree | dnapars | GLaMST | |
|---|---|---|---|---|
Tree Size | Total number of tree nodes | 1396 | 1199 | 1190 |
OD-Root | Out-degree of the root of the tree | 1 | 1 | 1 |
OD-Avg | Average out-degree of all tree nodes | 0.999 | 0.999 | 0.999 |
OD-Ratio | Ratio between OD-Root and OD-Avg | 1.001 | 1.001 | 1.001 |
T | Maximum depth of the tree leaves | 62 | 147 | 130 |
PL-Min | Minimum distance from root to any leaf | 12 | 38 | 36 |
PL-Avg | Average distance from root to all nodes | 30.164 | 84.624 | 79.821 |
DRSN-Min | Minimum distance from root to any branching node | 2 | 36 | 34 |
DLFSN-Min | Minimum distance from first branching node to leaves | 10 | 2 | 2 |
DLFSN-Avg | Average distance from first branching node to leaves | 28.164 | 48.624 | 45.821 |
DASN-Min | Minimum distance between branching nodes | 1 | 1 | 1 |
DASN-Avg | Average distance between branching nodes | 2.903 | 2.590 | 2.216 |