Table 3 Clustering performance based on synthetic data (J=1000)
From: Bayesian gamma-negative binomial modeling of single-cell RNA sequencing data
Zero-Inflation | 40% | 60% | 80% |
|---|---|---|---|
hGNB | 0.3697 ±0.007 | 0.1470 ±0.010 | 0.0669 ±0.008 |
PCA | 0.2594 ±0.009 | 0.0964 ±0.018 | 0.0349 ±0.018 |
ZIFA | 0.3189 ±0.011 | 0.1191 ±0.004 | 0.0475 ±0.002 |
ZINB | 0.3574 ±0.019 | 0.1534 ±0.013 | 0.0770 ±0.009 |
Monocle | 0.2316 ±0.015 | 0.0995 ±0.011 | 0.0490 ±0.001 |
scVI | 0.2590 ±0.046 | 0.1025 ±0.014 | 0.0351 ±0.006 |