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Table 2 Designation and chromosomal locations of corresponding prophage and PLE in EHEC strains FRIK804 and Sakai. Prophage and PLE were numerically designated in clockwise order (see Fig. 1). The locations of prophage in Sakai were used to identify and locate most prophage and PLE in FRIK804

From: Chronological set of E. coli O157:H7 bovine strains establishes a role for repeat sequences and mobile genetic elements in genome diversification

 

FRIK804

Sakai

 

Name

Start

End

Length (bp)

Name

Start

End

Length (bp)

Notes

Φ804–1

300,040

310,625

10,586

Sp1

300,041

310,626

10,586

 

Φ804–2

310,626

323,512

12,887

Sp2

310,627

323,513

12,887

 

Φ804–3

409,092

448,271

39,180

    

Mu-like prophagea

Φ804–4

929,716

968,301

38,586

Sp3

891,123

929,708

38,586

 

PLE804–1

1,095,506

1,152,526

57,021

     

Φ804–5

1,256,797

1,306,445

49,649

Sp4

1,161,091

1,210,740

49,650

 

Φ804–6

1,341,717

1,403,616

61,900

Sp5

1,246,012

1,308,719

62,708

stx2-prophageb

PLE804–2

1,465,380

1,552,938

87,559

SpLE1

1,370,456

1,456,704

86,249

 

Φ804–7

1,637,715

1,679,972

42,258

Sp6

1,541,470

1,589,892

48,423

Inversion terminus

Φ804–8

1,733,959

1,755,078

21,120

Sp7

1,594,570

1,610,032

15,463

 

Φ804–9

2,097,886

2,142,115

44,230

Sp8

1,618,153

1,665,049

46,897

Indel-4

Φ804–10

2,142,116

2,187,895

45,780

Sp9

1,757,506

1,815,680

58,175

Indel-4

Φ804–11

2,366,081

2,417,801

51,721

Sp10

1,921,414

1,972,525

51,112

 

Φ804–12

2,523,534

2,583,605

60,072

Sp11

2,158,174

2,203,951

45,778

 

Φ804–13

2,675,768

2,722,663

46,896

Sp12

2,203,952

2,250,093

46,142

 

Φ804–14

2,730,784

2,746,246

15,463

Sp13

2,592,901

2,614,020

21,120

 

Φ804–15

2,750,924

2,801,116

50,193

Sp14

2,668,007

2,712,035

44,029

Inversion terminus

PLE804–3

2,828,472

2,843,243

14,772

SpLE2

2,738,079

2,751,537

13,459

 

Φ804–16

2,987,650

3,036,836

49,187

Sp15

2,895,926

2,943,804

47,879

stx1-prophagec

Φ804–17

3,287,328

3,295,878

8551

Sp16

3,192,983

3,201,533

8551

 

Φ804–18

3,570,310

3,594,556

24,247

Sp17

3,475,965

3,500,163

24,199

 

PLE804–4

3,946,431

3,969,884

23,454

SpLE3

3,852,036

3,875,489

23,454

 

PLE804–5

4,675,258

4,718,713

43,456

SpLE4

4,580,864

4,624,313

43,450

 
    

Sp18

5,040,843

5,079,601

38,759

Mu-like prophagea

PLE804–6

5,402,757

5,412,991

10,235

SpLE5

5,347,085

5,357,319

10,235

 

PLE804–7

5,413,043

5,447,190

34,148

SpLE6

5,357,371

5,391,518

34,148

 
  1. aThe Mu-like prophage is capable of transposition
  2. bFunctional phage
  3. cDoes not produce functional phage
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BMC Genomics

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