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Table 2 Designation and chromosomal locations of corresponding prophage and PLE in EHEC strains FRIK804 and Sakai. Prophage and PLE were numerically designated in clockwise order (see Fig. 1). The locations of prophage in Sakai were used to identify and locate most prophage and PLE in FRIK804

From: Chronological set of E. coli O157:H7 bovine strains establishes a role for repeat sequences and mobile genetic elements in genome diversification

  FRIK804 Sakai  
Name Start End Length (bp) Name Start End Length (bp) Notes
Φ804–1 300,040 310,625 10,586 Sp1 300,041 310,626 10,586  
Φ804–2 310,626 323,512 12,887 Sp2 310,627 323,513 12,887  
Φ804–3 409,092 448,271 39,180      Mu-like prophagea
Φ804–4 929,716 968,301 38,586 Sp3 891,123 929,708 38,586  
PLE804–1 1,095,506 1,152,526 57,021      
Φ804–5 1,256,797 1,306,445 49,649 Sp4 1,161,091 1,210,740 49,650  
Φ804–6 1,341,717 1,403,616 61,900 Sp5 1,246,012 1,308,719 62,708 stx2-prophageb
PLE804–2 1,465,380 1,552,938 87,559 SpLE1 1,370,456 1,456,704 86,249  
Φ804–7 1,637,715 1,679,972 42,258 Sp6 1,541,470 1,589,892 48,423 Inversion terminus
Φ804–8 1,733,959 1,755,078 21,120 Sp7 1,594,570 1,610,032 15,463  
Φ804–9 2,097,886 2,142,115 44,230 Sp8 1,618,153 1,665,049 46,897 Indel-4
Φ804–10 2,142,116 2,187,895 45,780 Sp9 1,757,506 1,815,680 58,175 Indel-4
Φ804–11 2,366,081 2,417,801 51,721 Sp10 1,921,414 1,972,525 51,112  
Φ804–12 2,523,534 2,583,605 60,072 Sp11 2,158,174 2,203,951 45,778  
Φ804–13 2,675,768 2,722,663 46,896 Sp12 2,203,952 2,250,093 46,142  
Φ804–14 2,730,784 2,746,246 15,463 Sp13 2,592,901 2,614,020 21,120  
Φ804–15 2,750,924 2,801,116 50,193 Sp14 2,668,007 2,712,035 44,029 Inversion terminus
PLE804–3 2,828,472 2,843,243 14,772 SpLE2 2,738,079 2,751,537 13,459  
Φ804–16 2,987,650 3,036,836 49,187 Sp15 2,895,926 2,943,804 47,879 stx1-prophagec
Φ804–17 3,287,328 3,295,878 8551 Sp16 3,192,983 3,201,533 8551  
Φ804–18 3,570,310 3,594,556 24,247 Sp17 3,475,965 3,500,163 24,199  
PLE804–4 3,946,431 3,969,884 23,454 SpLE3 3,852,036 3,875,489 23,454  
PLE804–5 4,675,258 4,718,713 43,456 SpLE4 4,580,864 4,624,313 43,450  
     Sp18 5,040,843 5,079,601 38,759 Mu-like prophagea
PLE804–6 5,402,757 5,412,991 10,235 SpLE5 5,347,085 5,357,319 10,235  
PLE804–7 5,413,043 5,447,190 34,148 SpLE6 5,357,371 5,391,518 34,148  
  1. aThe Mu-like prophage is capable of transposition
  2. bFunctional phage
  3. cDoes not produce functional phage