Table 4 Initial classification of the repetitive elements (REs) identified in the A. borealis genome assembly
From: De novo sequencing, assembly and functional annotation of Armillaria borealis genome
RE type | RE family | Number |
|---|---|---|
LTR retrotransposons | Copia | 5 |
Gypsy | 32 | |
Pao | 1 | |
LINE-retrotransposons | Tad1 | 5 |
Retrotransposons with a tyrosine recombinase (YR) | Ngaro | 3 |
Simple sequence repeats | Simple Repeats | 1 |
Classified | 47 (5.3%) | |
Unclassified | 839 (94.7%) | |
Total | 886 | |