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Table 2 Top differentially expressed genes in pairwise comparisons of Scylla paramamosain megalopa

From: mRNA profile provides novel insights into stress adaptation in mud crab megalopa, Scylla paramamosain after salinity stress

#Gene ID FDR log2FC Regulated Gene name
CS vs LS
 gene.Scaffold1859_g1 1.18E-26 3.290026 up gamma-butyrobetaine dioxygenase-like
 Scylla_paramamosain_newGene_6838 1.47E-16 2.989931 up gamma-butyrobetaine dioxygenase-like
 Scylla_paramamosain_newGene_6835 5.13E-33 2.44134 up gamma-butyrobetaine dioxygenase-like
 Scylla_paramamosain_newGene_33600 2.59E-10 2.335425 up facilitated trehalose transporter Tret1
 gene.Scaffold900_g16 1.14E-19 2.333814 up putative defense protein 3
 gene.Scaffold728_g5 5.51E-15 2.212924 up sodium/potassium-transporting ATPase subunit alpha
 gene.Scaffold1064_g3 2.38E-38 2.129319 up rhodanese 1-like protein
 Scylla_paramamosain_newGene_6834 4.13E-15 2.082766 up gamma-butyrobetaine dioxygenase-like
 Scylla_paramamosain_newGene_16509 4.33E-07 2.01342 up retrovirus-related Pol polyprotein from type-1 retrotransposable element R1
 Scylla_paramamosain_newGene_33599 4.42E-07 1.97739 up facilitated trehalose transporter Tret1-like
 Scylla_paramamosain_newGene_29537 2.34E-12 1.958022 up hypothetical protein DAPPUDRAFT_316225
 Scylla_paramamosain_newGene_30171 2.00E-07 1.881975 up proton-coupled folate transporter-like
 gene.Scaffold3248_g1 6.40E-06 1.821815 up estrogen sulfotransferase
 Scylla_paramamosain_newGene_1164 1.90E-10 1.57869 up uncharacterized protein LOC108678138
 Scylla_paramamosain_newGene_24744 2.06E-11 1.532331 up uncharacterized protein LOC108665683
 gene.Scaffold454_g9 1.97E-05 1.409072 up uncharacterized protein LOC108679078
 gene.Scaffold2007_g4 0.00127 1.376571 up hemocyanin subunit 2
 gene.Scaffold928_g5 0.000491 1.355006 up choline transporter-like protein 1
 gene.Scaffold1510_g2 2.93E-10 1.341927 up Na+/K+/2Cl- cotransporter
 gene.Scaffold286_g11 0.005894 1.326881 up vitellogenin-like protein
 Scylla_paramamosain_newGene_8114 7.36E-35 −4.11054 down casein kinase II subunit alpha, partial
 Scylla_paramamosain_newGene_10699 4.57E-30 −3.6122 down calponin/transgelin
 gene.Scaffold1258_g2 1.41E-07 −2.09292 down zinc finger RNA-binding protein-like isoform X3
 Scylla_paramamosain_newGene_32270 3.42E-06 −1.88317 down hypothetical protein OCBIM_22027343mg, partial
 Scylla_paramamosain_newGene_19291 7.58E-13 −1.85211 down aminopeptidase N-like
 Scylla_paramamosain_newGene_27140 8.06E-06 −1.81576 down mucin-1
 gene.Scaffold3610_g1 5.05E-09 −1.66044 down neprilysin-11-like
 gene.Scaffold271_g7 2.08E-06 −1.61464 down gamma-butyrobetaine dioxygenase-like
 Scylla_paramamosain_newGene_40084 3.64E-06 −1.60139 down microtubule-associated protein 1A-like
 gene.Scaffold132_g13 0.00018 −1.58708 down uncharacterized protein APZ42_025850
 Scylla_paramamosain_newGene_29679 0.000254 −1.56656 down hypothetical protein KP79_PYT22069
 Scylla_paramamosain_newGene_36343 0.000281 −1.56571 down proton-coupled folate transporter-like
 Scylla_paramamosain_newGene_21183 0.000516 −1.49135 down conserved Plasmodium membrane protein, unknown function
 Scylla_paramamosain_newGene_42681 8.73E-06 −1.46576 down cuticle protein AM
 Scylla_paramamosain_newGene_25183 0.000497 −1.4642 down reverse transcriptase, partial
 Scylla_paramamosain_newGene_13981 0.001003 −1.43755 down Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
 gene.Scaffold1359_g15 0.005213 −1.34713 down (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O-like isoform X1
 Scylla_paramamosain_newGene_34432 0.004251 −1.34333 down clotting protein precursor, partial
 Scylla_paramamosain_newGene_25256 0.001576 −1.28034 down peritrophin-44-like protein
CS vs HS
 gene.Scaffold96_g16 0.004113 1.046966 up projectin
 gene.Scaffold1291_g1 0.002581 1.121082 up UPF0183 protein CG7083 isoform X2
 gene.Scaffold145_g2 0.002359 1.13704 up ubiA prenyltransferase domain-containing protein 1 homolog
 Scylla_paramamosain_newGene_21007 0.001607 1.164676 up basement membrane-specific heparan sulfate proteoglycan core protein, partial
 Scylla_paramamosain_newGene_11556 0.000132 1.396239 up multidrug resistance-associated protein 1 isoform X1
 gene.Scaffold1258_g2 2.18E-08 −1.79188 down zinc finger RNA-binding protein-like isoform X3
 Scylla_paramamosain_newGene_39192 0.000382 −1.27846 down gamma-interferon induced thiol reductase GILT3
 gene.Scaffold1445_g3 0.003801 −1.18908 down structural maintenance of chromosomes protein 2-like
 gene.Scaffold1241_g1 0.002581 −1.16992 down uncharacterized protein LOC108666206
  1. LS Represents low salinity of 14 ppt, CS Represents control group of 25 ppt salinity, HS Represents high salinity of 39 ppt