Table 2 Top differentially expressed genes in pairwise comparisons of Scylla paramamosain megalopa
#Gene ID | FDR | log2FC | Regulated | Gene name |
|---|---|---|---|---|
CS vs LS | ||||
 gene.Scaffold1859_g1 | 1.18E-26 | 3.290026 | up | gamma-butyrobetaine dioxygenase-like |
 Scylla_paramamosain_newGene_6838 | 1.47E-16 | 2.989931 | up | gamma-butyrobetaine dioxygenase-like |
 Scylla_paramamosain_newGene_6835 | 5.13E-33 | 2.44134 | up | gamma-butyrobetaine dioxygenase-like |
 Scylla_paramamosain_newGene_33600 | 2.59E-10 | 2.335425 | up | facilitated trehalose transporter Tret1 |
 gene.Scaffold900_g16 | 1.14E-19 | 2.333814 | up | putative defense protein 3 |
 gene.Scaffold728_g5 | 5.51E-15 | 2.212924 | up | sodium/potassium-transporting ATPase subunit alpha |
 gene.Scaffold1064_g3 | 2.38E-38 | 2.129319 | up | rhodanese 1-like protein |
 Scylla_paramamosain_newGene_6834 | 4.13E-15 | 2.082766 | up | gamma-butyrobetaine dioxygenase-like |
 Scylla_paramamosain_newGene_16509 | 4.33E-07 | 2.01342 | up | retrovirus-related Pol polyprotein from type-1 retrotransposable element R1 |
 Scylla_paramamosain_newGene_33599 | 4.42E-07 | 1.97739 | up | facilitated trehalose transporter Tret1-like |
 Scylla_paramamosain_newGene_29537 | 2.34E-12 | 1.958022 | up | hypothetical protein DAPPUDRAFT_316225 |
 Scylla_paramamosain_newGene_30171 | 2.00E-07 | 1.881975 | up | proton-coupled folate transporter-like |
 gene.Scaffold3248_g1 | 6.40E-06 | 1.821815 | up | estrogen sulfotransferase |
 Scylla_paramamosain_newGene_1164 | 1.90E-10 | 1.57869 | up | uncharacterized protein LOC108678138 |
 Scylla_paramamosain_newGene_24744 | 2.06E-11 | 1.532331 | up | uncharacterized protein LOC108665683 |
 gene.Scaffold454_g9 | 1.97E-05 | 1.409072 | up | uncharacterized protein LOC108679078 |
 gene.Scaffold2007_g4 | 0.00127 | 1.376571 | up | hemocyanin subunit 2 |
 gene.Scaffold928_g5 | 0.000491 | 1.355006 | up | choline transporter-like protein 1 |
 gene.Scaffold1510_g2 | 2.93E-10 | 1.341927 | up | Na+/K+/2Cl- cotransporter |
 gene.Scaffold286_g11 | 0.005894 | 1.326881 | up | vitellogenin-like protein |
 Scylla_paramamosain_newGene_8114 | 7.36E-35 | −4.11054 | down | casein kinase II subunit alpha, partial |
 Scylla_paramamosain_newGene_10699 | 4.57E-30 | −3.6122 | down | calponin/transgelin |
 gene.Scaffold1258_g2 | 1.41E-07 | −2.09292 | down | zinc finger RNA-binding protein-like isoform X3 |
 Scylla_paramamosain_newGene_32270 | 3.42E-06 | −1.88317 | down | hypothetical protein OCBIM_22027343mg, partial |
 Scylla_paramamosain_newGene_19291 | 7.58E-13 | −1.85211 | down | aminopeptidase N-like |
 Scylla_paramamosain_newGene_27140 | 8.06E-06 | −1.81576 | down | mucin-1 |
 gene.Scaffold3610_g1 | 5.05E-09 | −1.66044 | down | neprilysin-11-like |
 gene.Scaffold271_g7 | 2.08E-06 | −1.61464 | down | gamma-butyrobetaine dioxygenase-like |
 Scylla_paramamosain_newGene_40084 | 3.64E-06 | −1.60139 | down | microtubule-associated protein 1A-like |
 gene.Scaffold132_g13 | 0.00018 | −1.58708 | down | uncharacterized protein APZ42_025850 |
 Scylla_paramamosain_newGene_29679 | 0.000254 | −1.56656 | down | hypothetical protein KP79_PYT22069 |
 Scylla_paramamosain_newGene_36343 | 0.000281 | −1.56571 | down | proton-coupled folate transporter-like |
 Scylla_paramamosain_newGene_21183 | 0.000516 | −1.49135 | down | conserved Plasmodium membrane protein, unknown function |
 Scylla_paramamosain_newGene_42681 | 8.73E-06 | −1.46576 | down | cuticle protein AM |
 Scylla_paramamosain_newGene_25183 | 0.000497 | −1.4642 | down | reverse transcriptase, partial |
 Scylla_paramamosain_newGene_13981 | 0.001003 | −1.43755 | down | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial |
 gene.Scaffold1359_g15 | 0.005213 | −1.34713 | down | (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O-like isoform X1 |
 Scylla_paramamosain_newGene_34432 | 0.004251 | −1.34333 | down | clotting protein precursor, partial |
 Scylla_paramamosain_newGene_25256 | 0.001576 | −1.28034 | down | peritrophin-44-like protein |
CS vs HS | ||||
 gene.Scaffold96_g16 | 0.004113 | 1.046966 | up | projectin |
 gene.Scaffold1291_g1 | 0.002581 | 1.121082 | up | UPF0183 protein CG7083 isoform X2 |
 gene.Scaffold145_g2 | 0.002359 | 1.13704 | up | ubiA prenyltransferase domain-containing protein 1 homolog |
 Scylla_paramamosain_newGene_21007 | 0.001607 | 1.164676 | up | basement membrane-specific heparan sulfate proteoglycan core protein, partial |
 Scylla_paramamosain_newGene_11556 | 0.000132 | 1.396239 | up | multidrug resistance-associated protein 1 isoform X1 |
 gene.Scaffold1258_g2 | 2.18E-08 | −1.79188 | down | zinc finger RNA-binding protein-like isoform X3 |
 Scylla_paramamosain_newGene_39192 | 0.000382 | −1.27846 | down | gamma-interferon induced thiol reductase GILT3 |
 gene.Scaffold1445_g3 | 0.003801 | −1.18908 | down | structural maintenance of chromosomes protein 2-like |
 gene.Scaffold1241_g1 | 0.002581 | −1.16992 | down | uncharacterized protein LOC108666206 |