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Table 3 Identified prophages and integrative elements (IE) in STEC O145:H25 str. EN1I-0044-2

From: Comparative genomic analysis of a Shiga toxin-producing Escherichia coli (STEC) O145:H25 associated with a severe pediatric case of hemolytic uremic syndrome in Davidson County, Tennessee, US

Name

Contig

Contig position (start)

Contig position (end)

Size (Kb)

GC%

Insertion site

Most common Phage Type

T3SS effector proteins

Prophages

 P01

1

234,098

252,152

22.3

48

ybhB

Stx2 converting phage vB_EcoP_24B (Podoviridae-like)

traR, nleG, espJ

 P02

2

277,808

366,514

88.7

50.1

ybhB

Enterobacteria phage YYZ-2008 (unclassified)

tRNA’s (Arg, Met), nleG

 P03

3

254,241

303,995

49.8

49

yjbN

Enterobacteria phage mEp460 (lambda-like)

fosA

 P04

4

202,949

238,006

35.1

52.4

yhdJ

1 Enterobacteria phage P88 (Myoviridae)

 

 P05

4

266,538

299,976

33.4

45

tRNA (argW)

2 Salmonella Phage 103203_sal5 (Podoviridae)

 

 P06

7

249,027

263,648

14.6

48.1

yjbN

3 Enterobacteria phage mEp460 (lambda-like)

 

 P07

9

307

75,279

75

51.2

tRNA (serU)

Enterobacteria phage lambda NC_001416 (lambda-like)

traR, hydrolas

 P08

9

177,135

206,738

29.6

53.5

ompW

Enterobacteria phage BP-4795 (lambda-like)

terB, tRNA’s (Met, Arg), colonization factor AcfC

 P09

9

218,608

250,415

31.8

51

yciE

Enterobacteria phage phiP27 (lambda-like)

lom, peptidase S14, stx2a, serine protease

 P10

10

69,262

87,022

17.7

43.6

yegL

Enterobacteria phage BP-4795 (lambda-like)

nleH, espJ, cif*

 P11

11

1

18,207

18.2

48.7

 

Enterobacteria phage mEp237 (lambda-like)

terB

 P12

19

402

16,927

16.5

48.9

ompW

Phage Gifsy-2 (unclassified)

tRNA’s (Arg, Met)

 P13

20

2665

15,249

12.5

56.7

 

Enterobacteria phage BP-4795 (lambda-like)

 

Integrative elements

 IE01

1

721,994

747,268

25.2

48

tRNA (thrW)

 

Intimin-like adhesin fdeC, fimbrial operon

 IE02

3

372,461

383,975

11.5

47

yjjG

 

restriction endonuclease

 IE03

3

388,759

405,824

17

48

tRNA (leuX)

 

RM system, peptidase S8

 IE04

5

390,657

406,347

15.7

44

tRNA (selC)

 

Putative two-component abortive infection system (Abi), RM system

 IE05

7

102,015

153,886

51.9

38

tRNA (pheU)

LEE insertion site

espA, espB, espD, espF, espG, espH, espL, espS, espZ, map, tir, eae, adhesin efa1, nleE, nleB

 IE06

8

1

51,161

51.1

49

tRNA (metX)

OI-43 insertion site

Urease operon, tellurium resistance, espI

 IE07

8

78,288

86,298

8

42

viuB-fimD

  

 IE08

9

209,198

217,645

8.4

41

  

nleG, nleG, espO, nleF, nleH, espM