Skip to main content

Table 3 Identified prophages and integrative elements (IE) in STEC O145:H25 str. EN1I-0044-2

From: Comparative genomic analysis of a Shiga toxin-producing Escherichia coli (STEC) O145:H25 associated with a severe pediatric case of hemolytic uremic syndrome in Davidson County, Tennessee, US

Name Contig Contig position (start) Contig position (end) Size (Kb) GC% Insertion site Most common Phage Type T3SS effector proteins
Prophages
 P01 1 234,098 252,152 22.3 48 ybhB Stx2 converting phage vB_EcoP_24B (Podoviridae-like) traR, nleG, espJ
 P02 2 277,808 366,514 88.7 50.1 ybhB Enterobacteria phage YYZ-2008 (unclassified) tRNA’s (Arg, Met), nleG
 P03 3 254,241 303,995 49.8 49 yjbN Enterobacteria phage mEp460 (lambda-like) fosA
 P04 4 202,949 238,006 35.1 52.4 yhdJ 1 Enterobacteria phage P88 (Myoviridae)  
 P05 4 266,538 299,976 33.4 45 tRNA (argW) 2 Salmonella Phage 103203_sal5 (Podoviridae)  
 P06 7 249,027 263,648 14.6 48.1 yjbN 3 Enterobacteria phage mEp460 (lambda-like)  
 P07 9 307 75,279 75 51.2 tRNA (serU) Enterobacteria phage lambda NC_001416 (lambda-like) traR, hydrolas
 P08 9 177,135 206,738 29.6 53.5 ompW Enterobacteria phage BP-4795 (lambda-like) terB, tRNA’s (Met, Arg), colonization factor AcfC
 P09 9 218,608 250,415 31.8 51 yciE Enterobacteria phage phiP27 (lambda-like) lom, peptidase S14, stx2a, serine protease
 P10 10 69,262 87,022 17.7 43.6 yegL Enterobacteria phage BP-4795 (lambda-like) nleH, espJ, cif*
 P11 11 1 18,207 18.2 48.7   Enterobacteria phage mEp237 (lambda-like) terB
 P12 19 402 16,927 16.5 48.9 ompW Phage Gifsy-2 (unclassified) tRNA’s (Arg, Met)
 P13 20 2665 15,249 12.5 56.7   Enterobacteria phage BP-4795 (lambda-like)  
Integrative elements
 IE01 1 721,994 747,268 25.2 48 tRNA (thrW)   Intimin-like adhesin fdeC, fimbrial operon
 IE02 3 372,461 383,975 11.5 47 yjjG   restriction endonuclease
 IE03 3 388,759 405,824 17 48 tRNA (leuX)   RM system, peptidase S8
 IE04 5 390,657 406,347 15.7 44 tRNA (selC)   Putative two-component abortive infection system (Abi), RM system
 IE05 7 102,015 153,886 51.9 38 tRNA (pheU) LEE insertion site espA, espB, espD, espF, espG, espH, espL, espS, espZ, map, tir, eae, adhesin efa1, nleE, nleB
 IE06 8 1 51,161 51.1 49 tRNA (metX) OI-43 insertion site Urease operon, tellurium resistance, espI
 IE07 8 78,288 86,298 8 42 viuB-fimD   
 IE08 9 209,198 217,645 8.4 41    nleG, nleG, espO, nleF, nleH, espM