Skip to main content

Table 1 Individual characterization of the constructed RNA-seq libraries

From: Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

Sample

Number of total bases

Number of raw reads

GC (%)

Q20 (%)

Q30 (%)

Number of mapped reads

Mapped reads (%)

MC1

5,513,718,472

54,591,272

48.78

95.44

91.40

38,107,784

70

MC2

6,080,971,034

60,207,634

50.15

93.42

88.97

37,251,096

62

MC3

5,746,342,278

56,894,478

49.59

94.41

90.06

36,979,098

65

PC1

5,016,985,322

49,673,122

50.11

93.90

89.47

29,401,920

59

PC2

5,328,847,668

52,760,868

49.3

94.97

90.84

35,422,448

67

PC3

5,462,951,832

54,088,632

49.72

94.48

90.17

30,622,836

57

ME1

5,440,414,692

53,865,492

48,46

94.74

90.68

36,580,712

68

ME2

6,052,955,250

59,930,250

47.71

94.75

90.84

41,953,734

70

ME3

5,943,007,458

58,841,658

48.44

95.30

91.30

40,345,942

69

PE1

7,931,399,306

78,528,706

49.27

95.06

91.03

54,606,756

70

PE2

6,455,995,144

63,920,744

48.33

94.62

90.57

45,854,954

72

PE3

5,775,834,278

57,186,478

48.66

95.13

91.06

38,565,456

67

  1. MC Majorera Control, PC Palmera Control, ME Majorera Restricted, PE Palmera Restricted. Total bases, raw and mapped reads, GC content (%), Q20 (%) and Q30 (%) of each sequenced sample on the Illumina Hiseq 2500 (Illumina, San Diego, CA, USA) are described. Percentage of mapped reads was calculated using the number of mapped reads/raw reads