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Table 2 Pfams contributing most significantly (> 0.2%, p <  0.05) to differences across major taxonomic groups

From: Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis

Function name (Pfam ID) Relative Abundance (%) Contribution (%) p-values (< 0.05)
F C P F-C F-P F-C F-P
CarboxypepD_reg-like domain (pfam13715) 1.23 0 0.004 0.97 0.97 0.001 0.001
TonB-dependent Receptor Plug Domain (pfam07715) 1.13 0.01 0.44 0.77 0.76 0.001 0.016
TonB dependent receptor (pfam00593) 0.55 0.01 0.29 0.47 0.42 0.001 0.04
Response regulator receiver domain (pfam00072) 1.09 0.85 0.95 0.41 0.49 0.014 0.015
Sigma-70, region 4 (pfam08281) 0.51 0.04 0.11 0.41 0.37 0.001 0.002
LytTr DNA-binding domain (pfam04397) 0.40 0 0.06 0.35 0.34 0.005 0.029
Sigma-70 region 2 (pfam04542) 0.63 0.24 0.21 0.33 0.40 0.004 0.001
C-terminal domain of CHU protein family (pfam13585) 0.38 0 0 0.31 0.35 0.001 0.001
  1. F Flavobacteriaceae, C Cyanobacteria, P Proteobacteria