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Fig. 4 | BMC Genomics

Fig. 4

From: Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

Fig. 4

Enrichment tests on the core, the BAT93-specific and the JaloEEP558-specific transcriptomes. Enrichment tests were performed using the Parametric Analysis of Gene set Enrichment (PAGE) analysis on AgriGO v2 [59]. GO terms were considered enriched when comprising a minimum of 10 genes and presenting a False Discovery Rate (FDR) below 0.05. Enriched GO terms presented here were summarized using REVIGO [58]. Mean log2FC corresponds to the mean expression calculated using the log2FC from all DEGs within each GO. Grey boxes correspond to non-enriched GO terms

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