Fig. 5

The regulatory network associated with the differentially methylated genes (DMGs). Type I DMGs are shown in red, type II DMGs are shown in blue, and type III DMGs are shown in green. PPR, transcription factor (TF) pentatricopeptide repeat; CHLH/ABAR, mg-chelatase H subunit/putative abscisic acid receptor; TCA, tricarboxylic acid cycle; Acetyl-CoA, acetyl coenzyme A; ABA, abscisic acid; FCA, flowering control locus A; TCP, TF teosinte branched 1, cycloidea, pcf 1; I, NADH dehydrogenase:ubiquinone oxidoreductase; II, succinate:ubiquinone oxidoreductase; III, cytochrome bc1 complex; IV, cytochrome c oxidase; PDH, pyruvate dehydrogenase; PYR/PYL, pyrabactin resistance/pyrabactin resistance-like ABA receptor; PP2C, phosphatases type 2C; ROS, reactive oxygen species; SnPK2, sucrose nonfermenting 1-related protein kinase2; MYB, TF myeloblastosis; C2H2, TF cysteine 2/histidine 2 -type zinc finger proteins; bZIP, TF basic leucine zipper; WRKY80, WRKY family transcription factor 80; AP2, TF APETALA2; C8C5C3H, TF cysteine 8-cysteine 5 or cysteine 3-histidine-type zinc finger proteins; CACTA, En/Spm sub-class CACTA transposon protein; Ty3-gypsy, Ty3-gypsy subclass retrotransposon protein; Ty1-copia, Ty1-copia subclass retrotransposon protein; HSF, heat shock factor; HSP70, heat shock protein 70; MITE, miniature inverted repeat transposable element; HMG1/2, TF high mobility group 1/2; Dof, TF DNA binding with one finger protein