Fig. 4
From: Conditionally essential genes for survival during starvation in Enterococcus faecium E745
Presence of genes involved in long-term survival under nutrient-limiting conditions in E. faecium. Whole genome sequence based phylogenetic tree of 1644 E. faecium strains representing the global E. faecium population. The presence of the different E745 genes was plotted along the phylogeny using the R package ggtree. Highlighted in red are EfmE745_01205 (lacD2), EfmE745_02361 (entA), EfmE745_02364 (exuR) and EfmE745_02439 (usp). Genes that are significantly (χ2 test, P < 0.05 with Benjamini-Hochberg-correction for multiple testing) enriched in clade A1 strains versus non-clade A1 strrains are indicated by an asterisk