Genome-wide characterization of the GRF family and their roles in response to salt stress in Gossypium

Cao, Jun-Feng; Huang, Jin-Quan; Liu, Xia; Huang, Chao-Chen; Zheng, Zi-Shou; Zhang, Xiu-Fang; Shangguan, Xiao-Xia; Wang, Ling-Jian; Zhang, Yu-Gao; Wendel, Jonathan F.; Grover, Corrinne E.; Chen, Zhi-Wen

doi:10.1186/s12864-020-06986-0

BMC Genomics

Table 1 Sequence characteristics of GhGRF (Gossypium hirsutum growth-regulating factor) genes and corresponding proteins

From: Genome-wide characterization of the GRF family and their roles in response to salt stress in Gossypium

Gene Name	Locus Name	Chr	Genomics position	CDS	No. of Introns	Size (aa)	QLQ Domain	WRC Domain	MW	pI
GhGRF1A	Gh_A06G0219	A06	2,427,674–2,430,873	1782	3	593	161–197	232–274	64.42	8.83
GhGRF1D	Gh_D06G0212	D06	2,081,549–2,084,687	1731	3	576	162–198	233–275	62.37	6.48
GhGRF2A	Gh_A05G1848	A05	19,322,416–19,325,837	1833	3	610	162–198	231–273	65.38	8.36
GhGRF2D	Gh_D05G2044	D05	18,868,989–18,872,409	1833	3	610	160–196	231–273	65.58	8.06
GhGRF3A	Gh_A05G2252	A05	26,265,366–26,267,943	1815	3	604	143–179	215–257	65.27	6.58
GhGRF3D	Gh_D05G2512	D05	25,255,757–25,258,332	1815	3	604	143–179	215–257	65.41	6.48
GhGRF4A	Gh_A10G0804	A10	16,451,418–16,453,809	1428	3	475	139–175	210–252	52.25	6.63
GhGRF4D	Gh_D10G0959	D10	12,983,506–12,985,893	1428	3	475	139–175	210–252	52.03	6.34
GhGRF5A	Gh_A02G1438	A02	80,257,374–80,259,722	1569	3	522	132–168	203–245	57.25	7.71
GhGRF5D	Gh_D03G0282	D03	3,085,927–3,089,051	1686	3	561	140–176	211–253	61.24	8.14
GhGRF6A	Gh_A02G0827	A02	19,707,965–19,710,598	1695	3	564	144–180	216–258	61.30	7.26
GhGRF6D	Gh_D02G0876	D02	16,810,024–16,812,651	1710	3	569	144–180	216–258	61.70	6.97
GhGRF7D	Gh_D04G1000	D04	30,836,475–30,838,388	1092	3	363	73–109	147–189	39.96	9.13
GhGRF8A	Gh_A09G1285	A09	65,252,506–65,254,792	1218	3	405	83–119	149–191	44.21	8.25
GhGRF8D	Gh_D09G1332	D09	40,520,770–40,523,059	1209	3	402	81–117	147–189	43.77	8.54
GhGRF9A	Gh_A12G2234	A12	85,044,073–85,048,399	1491	4	496	101–137	158–200	53.51	6.96
GhGRF9D	Gh_D12G2699	D12	7626–9481	1491	3	496	102–138	159–201	53.58	6.94
GhGRF10A	Gh_A12G2177	A12	84,589,570–84,591,240	1401	3	466	152–188	210–252	50.86	5.89
GhGRF10D	Gh_D12G2356	D12	56,690,643–56,692,281	1377	3	458	144–180	202–244	50.05	5.95
GhGRF11A	Gh_A02G1205	A02	69,876,127–69,879,623	1008	2	335	30–66	93–135	36.71	7.74
GhGRF11D	Gh_D03G0527	D03	9,819,619–9,823,083	1026	2	341	30–66	93–135	37.40	7.81
GhGRF12A	Gh_A13G1365	A13	69,805,651–69,809,400	1005	2	334	30–66	93–135	36.42	8.30
GhGRF12D	Gh_D13G1673	D13	50,330,408–50,334,209	996	2	331	27–63	90–132	36.13	8.29
GhGRF13A	Gh_A10G0492	A10	5,324,275–5,325,500	987	2	328	8–44	75–117	36.51	9.02
GhGRF14A	Gh_A13G1692	A13	75,869,496–75,870,119	546	1	181	12–48	75–117	20.73	9.26
GhGRF14D	Gh_D13G2042	D13	55,933,517–55,934,140	546	1	181	12–48	75–117	20.99	9.48
GhGRF15A	Gh_A11G0749	A11	7,286,137–7,288,429	1338	3	445	70–104	141–183/337–378	48.82	9.59
GhGRF15D	Gh_D11G0870	D11	7,509,881–7,512,169	1338	3	445	70–104	141–183/337–378	48.63	9.58
GhGRF16A	Gh_A08G1584	A08	94,278,338–94,283,477	774	3	257	65–101	159–189	27.79	8.89
GhGRF16D	Gh_D08G1891	D08	56,643,392–56,644,288	744	2	247	65–101	137–179	26.71	8.89
GhGRF17A	Gh_A12G2042	A12	83,346,587–83,347,484	729	2	242	58–94	130–172	26.37	9.10
GhGRF17D	Gh_D12G2219	D12	55,327,073–55,327,959	804	1	267	83–119	155–197	29.24	9.14

Note: bp Base pair, Chr Chromosome, aa Amino acid, MW Molecular weight, kDa Kilodalton, pI Isoelectric point

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ISSN: 1471-2164

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