Table 1 Genome assembly and structural annotation of two Raffaelea genomes
From: Genomic and transcriptomic insights into Raffaelea lauricola pathogenesis
Organism | R. lauricola | R. aguacate |
|---|---|---|
Isolate name | RL4 | PL1004 |
Region of isolation | Florida (Brevard Co.), USA | Florida (Miami-Dade Co.), USA |
Sequencing platform | Illumina & Ion torrent | Illumina & Ion torrent |
Assembled genome size (Mb) | 34.3 | 35.7 |
Contig count | 480 | 843 |
Scaffold count | 169 | 368 |
Contig N50 (Kb) | 394.3 | 134.8 |
Scaffold N50 (Kb) | 3109.7 | 458.8 |
Coding genes | 10,315 | 11,654 |
Number of complete BUSCOs* | 1415 (98.4%) | 1406 (97.8%) |
Number of Fragmented BUSCOs | 21 | 29 |
GC content (%) | 55.3% | 57.5% |
Repeat rate (%) | 8.64% | 6.51% |
Reference | This study | This study |