Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies

Table 4 Assembly statistics for the CamDro2; CamDro3 (Pilon) using one round of Pilon [51] for polishing; and CamDro3 (BBMap) using one round of variant calling with BBMap (https://sourceforge.net/projects/bbmap/) for polishing. Note that CamDro3 (BBMap) was chosen over CamDro3 (Pilon) as the final version of CamDro3 because of better BUSCO and RNA-Seq mapping percentages

^aN90/N50 are the scaffold or contig lengths such that the sum of the lengths of all scaffolds or contigs of this size or larger is equal to 90/50% of the total assembly length
^bL90/L50 are the smallest number of scaffolds or contigs that make up at least 90/50% of the total assembly length
^cUsing minimum gap length of 25 bp
^dBUSCOs: Benchmarking Universal Single-Copy Orthologs [19] are mammalian BUSCOs from OrthoDB v. 9.1 genes [20]
^eOverall mapping rates using HiSat v. 2.1.0 [53] of dromedary RNA-Seq reads from Sequence Read Archive accession: SRP017619 and Alim et al. [54]

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