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Table 1 Result of data processing of RNAseq performed for four rye inbred lines using Illumina HiSeq 2000 system

From: The GAMYB gene in rye: sequence, polymorphisms, map location, allele-specific markers, and relationship with α-amylase activity

Sample

Raw Data

Trimmed Data

Total Bases

Read Count

Q30 (%)

Total Bases

Read Count

Q30 (%)

M12w1

11,702,831,822

115,869,622

96.27

11,314,892,610

112,863,536

97.56

M12w2

9,580,521,852

94,856,652

96.61

9,305,022,511

92,771,556

97.71

M12wl1

8,383,791,436

83,007,836

96.39

8,121,465,377

80,988,190

97.61

M12wl2

10,188,945,852

100,880,652

96.52

9,902,654,357

98,700,562

97.64

M12wl3

8,262,443,572

81,806,372

96.44

8,012,781,602

79,886,624

97.63

DS2w1

8,990,270,782

89,012,582

96.7

8,745,071,781

87,164,468

97.75

DS2w2

8,919,988,720

88,316,720

96.46

8,651,277,777

86,255,968

97.63

DS2wl1

9,516,783,378

94,225,578

96.4

9,221,235,694

91,939,090

97.6

DS2wl2

9,282,121,392

91,902,192

96.42

8,997,604,730

89,717,130

97.61

DS2wl3

10,305,669,936

102,036,336

96.01

10,003,200,236

99,819,220

97.19

RXL10w1

9,914,476,130

98,163,130

96.39

9,618,122,251

95,877,590

97.57

RXL10w2

8,362,917,362

82,801,162

95.97

8,111,094,232

80,948,782

97.18

RXL10wl1

6,894,170,918

68,259,118

95.69

6,680,084,234

66,723,890

96.95

RXL10wl2

7,355,772,834

72,829,434

96.44

7,133,202,875

71,110,558

97.61

L35w3

7,553,455,084

74,786,684

96.39

7,319,205,497

72,975,450

97.59

L35wl3

8,013,652,696

79,343,096

96.59

7,795,961,803

77,714,250

97.65

L35wl

9,717,103,344

96,208,944

96.58

9,444,304,014

94,146,958

97.66