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Table 1 Result of data processing of RNAseq performed for four rye inbred lines using Illumina HiSeq 2000 system

From: The GAMYB gene in rye: sequence, polymorphisms, map location, allele-specific markers, and relationship with α-amylase activity

Sample Raw Data Trimmed Data
Total Bases Read Count Q30 (%) Total Bases Read Count Q30 (%)
M12w1 11,702,831,822 115,869,622 96.27 11,314,892,610 112,863,536 97.56
M12w2 9,580,521,852 94,856,652 96.61 9,305,022,511 92,771,556 97.71
M12wl1 8,383,791,436 83,007,836 96.39 8,121,465,377 80,988,190 97.61
M12wl2 10,188,945,852 100,880,652 96.52 9,902,654,357 98,700,562 97.64
M12wl3 8,262,443,572 81,806,372 96.44 8,012,781,602 79,886,624 97.63
DS2w1 8,990,270,782 89,012,582 96.7 8,745,071,781 87,164,468 97.75
DS2w2 8,919,988,720 88,316,720 96.46 8,651,277,777 86,255,968 97.63
DS2wl1 9,516,783,378 94,225,578 96.4 9,221,235,694 91,939,090 97.6
DS2wl2 9,282,121,392 91,902,192 96.42 8,997,604,730 89,717,130 97.61
DS2wl3 10,305,669,936 102,036,336 96.01 10,003,200,236 99,819,220 97.19
RXL10w1 9,914,476,130 98,163,130 96.39 9,618,122,251 95,877,590 97.57
RXL10w2 8,362,917,362 82,801,162 95.97 8,111,094,232 80,948,782 97.18
RXL10wl1 6,894,170,918 68,259,118 95.69 6,680,084,234 66,723,890 96.95
RXL10wl2 7,355,772,834 72,829,434 96.44 7,133,202,875 71,110,558 97.61
L35w3 7,553,455,084 74,786,684 96.39 7,319,205,497 72,975,450 97.59
L35wl3 8,013,652,696 79,343,096 96.59 7,795,961,803 77,714,250 97.65
L35wl 9,717,103,344 96,208,944 96.58 9,444,304,014 94,146,958 97.66