Table 2 De novo transcriptome assembly statistics with Trinity program for 17 RNA samples of four rye inbred lines
Sample | All transcript contigs | Only longest isoform per ‘GENE’ |
|---|---|---|
Total trinity ‘genes’ | 150,758 | 150,758 |
Total trinity transcripts | 218,935 | 150,758 |
N50 | 1366 | 1366 |
Maximum contig length | 16,024 | 16,024 |
Minimum contig length | 201 | 201 |
Median contig length | 500 | 401 |
Average contig length | 839.29 | 703.25 |
Total assembled bases | 183,750,947 | 106,021,123 |