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Table 2 De novo transcriptome assembly statistics with Trinity program for 17 RNA samples of four rye inbred lines

From: The GAMYB gene in rye: sequence, polymorphisms, map location, allele-specific markers, and relationship with α-amylase activity

Sample All transcript contigs Only longest isoform per ‘GENE’
Total trinity ‘genes’ 150,758 150,758
Total trinity transcripts 218,935 150,758
N50 1366 1366
Maximum contig length 16,024 16,024
Minimum contig length 201 201
Median contig length 500 401
Average contig length 839.29 703.25
Total assembled bases 183,750,947 106,021,123