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Table 3 Genomic features of the five sequenced poultry strains

From: Sequencing of five poultry strains elucidates phylogenetic relationships and divergence in virulence genes in Morganella morganii

  PA17/10312 PA18/15564 PA18/16407 PA18/25921 PA19/9695
Number of contigs 78 59 47 548 667
Total length (bp) 4,085,866 3,675,879 3,702,167 4,066,432 3,988,823
N50 (bp) 244,109 403,330 989,625 403,126 49,931
GC content 50.2% 51.2% 51.2% 51.0% 51.6%
Genes 3840 3452 3490 3812 3756
Coding genes 3784 3393 3431 3718 3671
Genome completeness 100% 100% 100% 100% 100%
Contamination score (%)a 0.00 0.54 0.00 1.92 2.75
Strain heterogeneityb 0.00 0.00 0.00 37.50 50.00
  1. a,b For a detailed description of these metrics, see the CheckM paper [16]
  2. b The strain heterogeneity (SH) index indicates the proportion of the contamination that appears to be from the same or similar strains and is a number between 0 and 100