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Table 1 Putative enhancer RNAs and their distance to possible targets

From: Analysis of the brain transcriptome in lines of laying hens divergently selected for feather pecking

ncRNA LogFC padj closest gene LogFC padj distance (bp)
LOC112533590 2.199688474 0.003164539 AGWCL 0.701583764 0.000159023 84,768
LOC112532313 1.059839775 6.1822E-08 ARHGEF38 1.263617235 1.32471E-07 0
LOC107054701 2.235712776 0.000627778 BTN3A3L1 0.910991403 4.69011E-05 4116
LOC107053477 1.224734434 7.74962E-13 CD69L 1.802269534 0.000000001 45,910
LOC107055491 1.408150332 5.66615E-05 CD69L 1.802269534 0.000000001 55,660
LOC112531172 − 3.288998976 4.97887E-07 CHIR-B3 1.786356201 0.000385776 35,442
LOC107054530 −1.479256537 2.63879E-16 GLRA1 −0.97955118 4.18544E-06 0
LOC107054253 −1.945791606 1.66336E-23 MCTP2 0.500309061 7.24605E-10 159,951
LOC107054254 1.035893153 2.34176E-08 MCTP2 0.500309061 7.24605E-10 31,878
LOC112533579 −1.497091833 0.00226963 MHCIA7 2.301079795 5.8491E-21 398
LOC112533585 1.334870542 0.000257017 MHCIY 1.286449024 0.000638942 912
LOC112533594 1.666649682 0.000528436 MICA 3.453477244 7.27436E-54 0
LOC112533584 1.273414179 0.000170499 MICA 3.453477244 7.27436E-54 7938
LOC107051266 1.658081532 0.000148479 MICA 3.453477244 7.27436E-54 2538
LOC107057581 −2.429748947 0.003583672 MROH2B1 −2.057428188 1.87694E-14 5389
LOC107053142 −1.035600209 1.31726E-06 SH3YL1 −0.557882395 4.72211E-19 19,668
LOC107055047 −2.23006132 0.00045059 ST14 −0.987882765 2.7619E-53 0
LOC112531741 2.297070835 4.86832E-75 TPK1 0.503349743 2.69361E-72 109,006
LOC771247 1.36815265 8.59138E-05 VTG2 0.871553426 2.19279E-08 3143
LOC107053986 1.084007796 0.000152067 VTG2 0.871553426 2.19279E-08 0
LOC112533587 −1.591777998 0.000659726 ZNF226L −0.662767846 5.7519E-08 6697
  1. AGWCL antigen WC1.1, ARHGEF38 Rho guanine nucleotide exchange factor 38, BTN3A3L1 butyrophilin subfamily 3 member A3-like 1, CD69L CD69 molecule like, CHIR-B3 immunoglobulin-like receptor CHIR-B3, GLRA1 glycine receptor alpha 1, MCTP2 multiple C2 and transmembrane domain containing 2, MHCIA7 major histocompatibility complex, class I, A7, MHCIY MHC-like class I Y, MICA MHC class I polypeptide-related sequence A, MROH2B1 maestro heat-like repeat family member 2B 1, SH3YL1 SH3 and SYLF domain containing 1, ST14 ST14 transmembrane serine protease matriptase, TPK1 thiamin pyrophosphokinase 1, VTG2 vitellogenin 2, ZNF226L zinc finger protein 226-like