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Table 3 Gene set analysis of DE genes before and after light stimulation with clusterProfiler. The top 5 results of each category with a q value below 0.2 are shown

From: Analysis of the brain transcriptome in lines of laying hens divergently selected for feather pecking

Category ID Description q value
GO_BP GO:0007623 circadian rhythm 1.91764E-05
GO_BP GO:0048511 rhythmic process 6.88484E-05
GO_BP GO:0032922 circadian regulation of gene expression 8.31201E-05
GO_BP GO:0042752 regulation of circadian rhythm 0.022669043
GO_BP GO:0045892 negative regulation of transcription, DNA-templated 0.076074608
GO_CC GO:0005667 transcription factor complex 0.138038823
GO_MF GO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding 0.006730784
GO_MF GO:0001158 enhancer sequence-specific DNA binding 0.006730784
GO_MF GO:0035326 enhancer binding 0.006730784
GO_MF GO:0000976 transcription regulatory region sequence-specific DNA binding 0.00988553
GO_MF GO:1990837 sequence-specific double-stranded DNA binding 0.00988553
KEGG gga00250 Alanine, aspartate and glutamate metabolism 0.062575255
KEGG gga00514 Other types of O-glycan biosynthesis 0.062575255
KEGG gga04330 Notch signaling pathway 0.062575255
KEGG gga00240 Pyrimidine metabolism 0.062575255
KEGG gga04145 Phagosome 0.107115602