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Table 1 DGAT1 junction splicing efficiency association statistics for the top sequence variants and K232A

From: A new mechanism for a familiar mutation – bovine DGAT1 K232A modulates gene expression through multi-junction exon splice enhancement

DGAT1 Intron

Top SNP

P-value

K232A Rank

K232A P-value

Intron 1

rs209328075

3.60 × 10−30

69

6.19 × 10−29

Intron 2

K232A

5.25 × 10−46

1

5.25 × 10− 46

Intron 3

rs211223469

4.63 × 10−18

30

3.95 × 10−17

Intron 4

rs110825388

8.23 × 10−4

27

0.00119

Intron 5

rs209328075

7.47 × 10−5

61

3.17 × 10−4

Intron 6

rs377961056

2.43 × 10−4

1279

0.515

Intron 7

K232A

9.91 × 10−16

1

9.91 × 10−16

Intron 8

rs109162116

4.37 × 10−19

28

7.48 × 10−19

Intron 9

rs210757486

0.00742

1475

0.427

Intron 10

rs134628055

5.48 × 10−4

2278

0.827

Intron 11

rs109050667

8.23 × 10−10

70

1.68 × 10−8

Intron 12

rs137017663

3.26 × 10−5

377

0.0148

Intron 13

rs383740077

3.82 × 10−6

459

0.0312

Intron 14

rs443459090

4.25 × 10−7

214

1.32 × 10−4

  1. The fourth column displays the ranking of the association between K232A and splicing at the indicated intron, compared to all the markers. The significance of the K232A association is presented in the fifth column, compared to the P-value of the most-significantly associated variant in the third column (identical if the most significant variant was K232A). P-values smaller than the Bonferroni threshold (P = 1.14 × 10− 6) are highlighted using bold type