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Table 1 Summary statistics of the RNA-seq data

From: Genome-wide analysis of long non-coding RNAs in adult tissues of the melon fly, Zeugodacus cucurbitae (Coquillett)

Sample ID

Read Sum

Base Sum

GC (%)

N (%)

Q30 (%)

Genome Mapping Rate

fFB1

71,005,430

21,094,233,520

43.55

0

93.12

82.34%

fFB2

71,920,846

21,287,840,586

43.52

0

93.54

82.50%

fFB3

69,864,623

20,811,064,364

43.52

0

93.23

81.43%

fMG1

65,842,842

19,680,348,232

43.11

0

93.39

33.85%

fMG2

58,622,426

17,525,507,334

40.38

0

93.40

21.06%

fMG3

91,469,944

27,328,946,668

43.28

0

93.78

20.44%

fMT1

76,741,248

22,856,925,352

42.55

0

93.57

76.87%

fMT2

83,141,124

24,796,064,764

42.18

0

93.22

71.47%

fMT3

66,939,800

19,978,132,492

41.35

0

93.19

35.27%

fOV1

61,518,157

18,365,855,324

42.82

0

93.78

84.97%

fOV2

54,295,717

16,193,760,614

42.71

0

93.21

87.65%

fOV3

54,641,144

16,335,419,334

43.13

0

93.09

84.49%

mFB1

76,375,481

22,756,855,810

43.17

0

93.50

83.55%

mFB2

63,341,864

18,878,214,080

42.64

0

93.28

80.40%

mFB3

62,003,794

18,453,417,274

42.44

0

93.52

73.90%

mMG1

90,288,388

26,975,723,848

45.28

0

93.85

25.70%

mMG2

68,545,617

20,457,951,046

46.69

0

93.58

38.44%

mMG3

64,956,243

19,317,213,164

46.69

0

94.01

32.30%

mMT1

60,513,113

18,076,644,312

42.84

0

93.54

80.45%

mMT2

72,498,489

21,656,770,372

42.47

0

93.60

78.64%

mMT3

68,670,761

20,523,605,726

40.10

0

93.37

39.75%

mTE1

57,330,203

17,072,620,942

42.36

0

93.31

84.01%

mTE2

64,218,906

19,189,876,708

42.48

0

93.53

87.38%

mTE3

60,939,729

18,190,973,854

42.43

0

93.61

86.87%

  1. Note: Q30 refers to nucleotides with a quality value above 30 in reads. Genome mapping rate means the percentage of reads mapped to the reference genome
  2. Abbreviations: f/m female/male, MG midgut, MT Malpighian tubules, FB fat body, OV ovary, TE testis