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Table 1 Number of differentially expressed (DE) genes in tissues by gene categories averaged for two cows in the Main Cows dataset

From: Expression of mitochondrial protein genes encoded by nuclear and mitochondrial genomes correlate with energy metabolism in dairy cattle

Tissue MG (37) NuMP (1041) All (24,616) MtMP (13) Mt
tRNA
Mt
rRNA
Over Under Total DE Over Under Total DE Over Under Total DE
Adrenal cortex 0 0 0 66 157 223 2018 2532 4550 0 0 0
Adrenal medulla 2 0 2 124 89 213 1620 2260 3880 0 0 2
Brain caudal lobe 2 0 2 190 151 341 3354 4150 7504 0 0 2
Brain cerebellum 1 0 1 120 187 307 3282 3879 7161 0 0 1
Brain stem 0 0 0 95 161 256 1911 3294 5205 0 0 0
Heart 17 0 17 576 53 629 2185 2833 5018 13 2 2
Kidney cortex 5 0 5 315 30 345 1465 2851 4316 3 0 2
Kidney medulla 0 0 0 93 58 151 1618 2444 4062 0 0 0
Latissimus dorsi M. 14 0 14 481 74 555 2668 2970 5638 13 1 0
Leg muscle 14 0 14 456 80 536 2773 3083 5856 13 1 0
Leukocytes 0 9 9 99 368 467 5270 3948 9218 9 0 0
Liver 0 0 0 360 82 442 2914 3124 6038 0 0 0
Loin muscle 14 0 14 514 114 628 3853 3707 7560 13 1 0
Lung 0 5 5 31 430 461 1793 2565 4358 5 0 0
Lymph node 0 7 7 38 306 344 2649 2562 5211 7 0 0
Mammary 0 0 0 86 250 336 1805 1864 3669 0 0 0
Mediastinal LN 0 0 0 46 77 123 993 2432 3425 0 0 0
Omental fat 0 2 2 78 163 241 1107 1901 3008 0 0 2
Ovary 0 0 0 58 70 128 985 2018 3003 0 0 0
Pituitary gland 0 5 5 73 251 324 2522 3033 5555 5 0 0
Placenta 0 10 10 110 232 342 2842 3267 6109 10 0 0
Rib muscle 7 0 7 500 70 570 2325 2933 5258 7 0 0
Skin black 0 0 0 79 176 255 1814 2574 4388 0 0 0
Skin white 0 0 0 79 205 284 1780 2554 4334 0 0 0
Spleen 2 0 2 47 260 307 2003 2449 4452 0 0 2
Subcutaneous fat 0 0 0 105 95 200 1299 2238 3537 0 0 0
Thymus 0 10 10 63 363 426 3509 3208 6717 10 0 0
Thyroid 0 2 2 33 329 362 2335 2335 4670 2 0 0
Tongue 14 0 14 413 30 443 1369 2365 3734 13 1 0
  1. () total number of genes in a category; Over = Over-expression, Under = under-expression; MG Genes from mitochondrial genome including tRNA and rRNAs, NuMP Mitochondrial protein genes encoded by the nuclear genome, MtMP Mitochondrial protein genes encoded by the mitochondrial genome, Mt tRNA Mitochondrial transfer RNA, Mt rRNA Mitochondrial ribosomal RNA, All all genes from nuclear and mitochondrial genomes, M Muscle, LN Lymph node