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Table 1 HT-sequencing results showing the amounts of mRNA and sncRNA reads in the oyster samples. Sample classification was based on δ values. Amount of OsHV-1 DNA (copies per μl), number of clean reads and number of oyster and OsHV-1 reads are reported for each library. For the sample S6, details of the ribo-depleted library are also reported

From: Parallel analysis of miRNAs and mRNAs suggests distinct regulatory networks in Crassostrea gigas infected by Ostreid herpesvirus 1

Sample ID Sample classification (Fig. 1b) OsHV-1 DNA [copies/μl] Library type Clean reads [M] C. gigas reads [%] OsHV-1 reads [%]
S1 Mid 1 × 108 mRNA 53.51 91.6 0.84
sncRNA 13.61 96.8 0.07
S2 High 1.5 × 105 mRNA 64.92 91.5 < 0.01
sncRNA 13.66 96.7 0.04
S3 Low 8.3 × 106 mRNA 59.17 90.4 < 0.01
sncRNA 26.79 95.8 0.05
S4 Mid 1.6 × 107 mRNA 46.41 91.6 0.12
sncRNA 13.98 97.1 0.03
S5 High 3.5 × 104 mRNA 50.53 92.4 < 0.01
sncRNA 12.91 95.9 0.03
S6 Low 6.7 × 108 mRNA 51.98 87.6 1.64
sncRNA 13.33 90.7 0.07
total RNA 54.13 64.8 1.89
  1. Library types: mRNA RNA-seq libraries obtained by selecting the polyA+ RNAs, sncRNA small non-coding RNA libraries; total RNA, RNA-seq library obtained by ribosomal rRNA depletion