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Table 1 Genome statistics for mollusc genomes

From: Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome

Class   Speices Family Accession number Assembly size Number of scaffolds Contig N50 Scaffold N50 BUSCOs No.Proteins Reference
Bivalvia ** Anadara broughtonii Arcidae PRJNA521075 884,566,040 1026 1,797,717 44,995,656 97.70% 24,045 [4]
  Argopecten irradians concentricus Pectinidae GCA_004382765.1 874,784,041 82,208 63,725 1,246,717 91.00% 25,979 [45]
  Argopecten irradians irradians Pectinidae GCA_004382745.1 835,595,382 111,436 78,654 1,533,165 91.00% 26,777 [45]
  Bathymodiolus platifrons Mytilidae GCA_002080005.1 1,659,280,971 65,664 12,602 343,373 94.40% 33,584 [77]
  Crassostrea gigas Ostreidae GCF_000297895.1 557,735,934 7659 31,239 401,685 94.40% 46,748 [95]
  Dreissena rostriformis Dreissenidae GCA_007657795.1 1,241,703,712 18,514 45,905 131,390 83.30% 37,681 [12]
** Cyclina sinensis Veneridae GCA_012932295.1 903,119,975 187 2,587,078 46,470,132 92.70% 27,564 [90]
  Limnoperna fortunei Mytilidae GCA_003130415.1 1,673,223,206 20,580 32,203 309,123 81.90% 60,717 [85]
  Mizuhopecten yessoensis Pectinidae GCF_002113885.1 987,588,634 82,659 65,014 803,631 95.50% 41,567 [88]
  Modiolus philippinarum Mytilidae GCA_002080025.1 2,629,649,654 74,575 19,700 100,161 84.20% 36,549 [77]
  Pinctada fucata Pteriidae PRJDB2628 815,303,973 29,306 1629 167,048 91.10% 31,477 [82]
** Pinctada fucata martensii Pteriidae GCA_002216045.1 990,984,031 5039 21,518 59,032,463 86.30% / [20]
** Pecten maximus Pectinidae GCA_902652985.1 918,306,378 3983 1,258,799 44,824,366 95.50% 67,741 [39]
** Panopea generosa Hiatellidae GCA_902825435.1 942,353,201 18 14,495 57,743,597 66.70% / /
  Ruditapes philippinarum Veneridae GCA_009026015.1 1,123,164,463 30,670 29,238 345,005 91.00% 27,652 [94]
  Saccostrea glomerata Ostreidae GCA_003671525.1 788,118,542 10,107 39,800 804,232 92.10% 29,738 [58]
** Sinonovacula constricta Pharidae GCA_007844125.1 1,220,848,272 2450 976,936 65,929,677 91.92% 28,594 [65]
** Crassostrea virginica Ostreidae GCF_002022765.2 684,741,128 11 1,971,208 75,944,018 94.40% 60,213 /
** Crassostrea hongkongensis Ostreidae CNP0000529 610,039,375 660 2,576,225 55,627,392 95.80% 25,675 [61]
** Magallana hongkongensis Ostreidae WFKH00000000 757,928,205 11,926 49,472 72,332,161 94.60% 45,867 This study
  Mytilus coruscus Mytilidae GCA_011752425.1 1,903,825,920 10,484 817,337 898,347 96.44% 42,684 [44]
  Venustaconcha ellipsiformis Unionidae GCA_003401595.1 1,590,012,607 371,427 2813 6657 68.00% / [66]
Cephalopoda   Euprymna scolopes Sepiolidae GCA_004765925.1 5,280,013,996 59,146 3558 3,549,550 97.00% 29,089 [6]
  Octopus bimaculoides Octopodidae GCF_001194135.1 2,338,188,782 151,674 5532 475,182 86.50% 23,994 [2]
** Octopus sinensis Octopodidae GCA_006345805.1 2,719,151,902 13,516 490,217 105,892,736 50.00% / [44]
  Architeuthis dux Architeuthidae GCA_006491835.1 3,155,388,500 7276 9000 5,478,336 85.50% 51,225 [23]
Gastropoda ** Achatina fulica Achatinidae PRJNA511624 1,855,883,074 1010 721,038 59,589,303 91.70% 23,726 [30]
** Achatina immaculata Achatinidae GCA_009760885.1 1,653,153,977 563 3,802,429 56,367,627 96.27% 28,702 [45]
  Anentome helena Nassariidae WUUA000000000.1 1,720,191,841 2,637,315 56,088 2,075,175 / / /
  Biomphalaria glabrata Planorbidae GCF_000457365.1 916,388,084 331,401 7298 48,059 87.70% 36,675 [3]
  Elysia chlorotica Plakobranchidae GCA_003991915.1 557,480,303 9989 441,954 30,474 93.30% 24,980 [11]
  Haliotis discus Haliotidae PRJNA317403 1,865,475,499 80,032 41,000 200,099 90.70% 29,449 [56]
  Haliotis laevigata Haliotidae GCA_008038995.1 1,762,655,385 105,411 3353 81,233 84.56% 55,164 [8]
  Haliotis rufescens Haliotidae GCA_003343065.1 1,498,703,277 8371 283,651 1,895,871 95.10% 57,785 [51]
  Haliotis rubra Haliotidae GCA_003918875.1 1,378,265,264 2854 1,177,711 1,227,833 94.60% 44,137 [28]
  Lanistes nyassanus Ampullariidae GCA_004794575.1 507,389,202 17,149 25,785 317,839 96.30% 20,938 [78]
  Lottia gigantea Lottiidae GCF_000327385.1 359,505,668 4469 96,027 1,870,055 94.40% 23,822 [76]
  Limacina bulimoides Limacinidae SWLX000000000.1 2,901,939,372 3,735,750 884 893 30.30% / [19]
  Marisa cornuarietis Ampullariidae GCA_004794655.1 535,287,142 659 4,359,112 4,359,112 98.20% 23,827 [78]
** Pomacea canaliculata Ampullariidae GCF_003073045.1 440,159,624 24 1,072,857 31,531,291 94.40% 40,391 [47]
  Pomacea maculata Ampullariidae GCA_004794325.1 432,264,763 3908 75,997 375,864 96.40% 23,475 [78]
** Chrysomallon squamiferum Peltospiridae GCA_012295275.1 404,615,235 22 1,880,000 30,197,626 96.60% 16,917 [79]
  Radix auricularia Lymnaeidae GCA_002072015.1 909,764,068 4823 24,354 578,730 93.40% 17,338 [80]
  1. **Chromosome level assembly