Table 2 Characteristics of the LYP proteins
Gene name | Coding sequence length (bp) | Pprotein length (aa) | MW | PI | GRAVY | Extron number | PDB domain 4EBZ | CDD domain LysM | Best hit gene in Arabidopsis | Corresponding gene name in Arabidopsis |
|---|---|---|---|---|---|---|---|---|---|---|
AtCERK1/LYK1 | 1854 | 618aa | 67.32 kDa | 6.79 | −0.012* | 12 | D | D | AT3G21630.1 | LYK1 |
AtLYK2 | 1965 | 655aa | 73.17 kDa | 6.18 | −0.291* | 2 | D | D | AT3G01840.1 | LYK2 |
AtLYK3 | 1956 | 652aa | 71.45 kDa | 6.28 | −0.004* | 11 | D | D | AT1G51940.1 | LYK3 |
AtLYK4 | 1839 | 613aa | 66.63 kDa | 5.13 | −0.057* | 1 | D | D | AT2G23770.1 | LYK4 |
AtLYK5 | 1995 | 665aa | 72.58 kDa | 5.84 | −0.117* | 1 | D | D | AT2G33580.1 | LYK5 |
AtLYM1 | 1251 | 417aa | 43.49 kDa | 4.65 | 0.293 | 5 | D | D | AT1G21880.2 | LYM1 |
AtLYM2 | 1053 | 351aa | 37.75 kDa | 6.23 | 0.04 | 4 | D | D | AT2G17120.1 | LYM2 |
AtLYM3 | 1272 | 424aa | 44.16 kDa | 4.77 | 0.243 | 5 | D | D | AT1G77630.1 | LYM3 |
FvLYK1a | 2037 | 679aa | 75.29 kDa | 6.26 | −0.054* | 10 | D | D | AT3G21630.1 | LYK1 |
FvLYK1b1 | 1860 | 620aa | 68.52 kDa | 4.94 | −0.2* | 12 | D |  | AT3G21630.1 | LYK1 |
FvLYK2 | 2142 | 714aa | 78.52 kDa | 6.84 | −0.03* | 2 | D | D | AT3G01840.1 | LYK2 |
FvLYK3a1 | 1974 | 658aa | 72.71 kDa | 6.51 | −0.047* | 11 | D | D | AT1G51940.1 | LYK3 |
FvLYK4/5a1 | 2385 | 795aa | 87.54 kDa | 6.82 | 0.021 | 7 | D |  | AT2G23770.1 | LYK4 |
FvLYK4/5a2 | 2016 | 672aa | 73.26 kDa | 6.23 | −0.113* | 1 | D | D | AT2G33580.1 | LYK5 |
FvLYK4/5a3 | 1965 | 655aa | 70.90 kDa | 6.14 | −0.138* | 1 | D | D | AT2G33580.1 | LYK5 |
FvLYK4/5b | 1860 | 620aa | 69.09 kDa | 6.72 | 0.04 | 1 | D | D | AT2G23770.1 | LYK4 |
FvLYK4/5c1 | 1743 | 581aa | 64.21 kDa | 6.39 | 0.041 | 1 | D | D | AT2G23770.1 | LYK4 |
FvLYM1/3–1 | 1257 | 419aa | 43.65 kDa | 4.98 | 0.268 | 5 | D | D | AT1G21880.2 | LYM1 |
FvLYM1/3–2 | 1191 | 397aa | 42.60 kDa | 6.32 | 0.181 | 5 | D | D | AT1G21880.2 | LYM1 |
FvLYM2–1 | 2847 | 949aa | 101.63 kDa | 7.62* | 0.323 | 17 | D | D | AT4G38380.1 | MATE efflux family protein |
FvNFP1 | 1872 | 624aa | 68.95 kDa | 8.05* | 0.105 | 1 | D | D | AT2G33580.1 | LYK5 |
MdLYK1a | 1878 | 626aa | 68.98 kDa | 6.37 | −0.112* | 12 | D |  | AT3G21630.1 | LYK1 |
MdLYK1b1 | 1890 | 630aa | 69.54 kDa | 5.03 | −0.09* | 12 | D |  | AT3G21630.1 | LYK1 |
MdLYK1b2 | 1824 | 608aa | 66.72 kDa | 5.38 | −0.12* | 12 | D | D | AT3G21630.1 | LYK1 |
MdLYK2 | 2067 | 689aa | 75.24 kDa | 6.92 | −0.069* | 1 | D | D | AT3G01840.1 | LYK2 |
MdLYK3a1 | 1980 | 660aa | 72.94 kDa | 7.13* | −0.066* | 11 | D | D | AT1G51940.1 | LYK3 |
MdLYK3a2 | 1980 | 660aa | 72.65 kDa | 6.27 | −0.056* | 11 | D | D | AT1G51940.1 | LYK3 |
MdLYK3b1 | 1629 | 543aa | 60.77 kDa | 5.73 | −0.109* | 9 | D | D | AT1G51940.1 | LYK3 |
MdLYK3b2 | 1824 | 608aa | 68.76 kDa | 6.18 | −0.267* | 7 | D | D | AT1G51940.1 | LYK3 |
MdLYK4/5a1 | 1986 | 662aa | 72.19 kDa | 4.87 | −0.074* | 1 | D | D | AT2G23770.1 | LYK4 |
MdLYK4/5c1 | 756 | 252aa | 27.80 kDa | 4.43 | 0.04 | 1 | D | D | AT2G23770.1 | LYK4 |
MdLYK4/5c2 | 1845 | 615aa | 68.29 kDa | 6.71 | 0.002 | 1 | D | D | AT2G23770.1 | LYK4 |
MdLYM1/3–1 | 1185 | 395aa | 42.24 kDa | 6.37 | 0.255 | 5 | D | D | AT1G21880.2 | LYM1 |
MdLYM1/3–2 | 1254 | 418aa | 43.49 kDa | 4.7 | 0.368 | 5 | D | D | AT1G21880.2 | LYM1 |
MdLYM1/3–3 | 1260 | 420aa | 43.85 kDa | 5.99 | 0.374 | 5 | D | D | AT1G21880.2 | LYM1 |
MdLYM2–1 | 1068 | 356aa | 38.31 kDa | 7.25* | 0.09 | 4 | D | D | AT2G17120.1 | LYM2 |
MdNFP1 | 1860 | 620aa | 69.00 kDa | 6.98 | 0.017 | 1 | D | D | AT2G33580.1 | LYK5 |
MdNFP2 | 1143 | 381aa | 41.79 kDa | 8.29* | −0.006* | 2 | D | D | AT2G23770.1 | LYK4 |
MdWAKL1 | 1938 | 646aa | 72.01 kDa | 5.94 | −0.121* | 2 | D | D | AT1G16120.1 | WAKL1 |
MdWAKL2 | 1500 | 500aa | 56.17 kDa | 6.83 | −0.207* | 2 | D | D | AT1G16130.1 | WAKL2 |
MdWAKL3 | 1479 | 493aa | 54.68 kDa | 7.8* | 0.006 | 2 | D | D | AT1G16120.1 | WAKL1 |
MdWAKL4 | 1935 | 645aa | 71.87 kDa | 6.32 | −0.103* | 2 | D | D | AT1G16150.1 | WAKL4 |
PavLYK1a | 801 | 267aa | 30.13 kDa | 7.74* | −0.049* | 4 | D |  | AT3G21630.1 | LYK1 |
PavLYK1b1 | 675 | 225aa | 25.03 kDa | 6.73 | −0.144* | 3 | D | D | AT3G21630.1 | LYK1 |
PavLYK3a1 | 1914 | 638aa | 70.56 kDa | 6.56 | −0.003* | 10 | D | D | AT1G51940.1 | LYK3 |
PavLYK3a2 | 1776 | 592aa | 66.34 kDa | 4.99 | −0.107* | 8 | D | D | AT1G51940.1 | LYK3 |
PavLYK3b1 | 3042 | 1014aa | 115.03 kDa | 6.74 | −0.214* | 20 | D | D | AT1G60780.1 | HAPLESS 13 |
PavLYK4/5b | 2940 | 980aa | 108.71 kDa | 7.2* | −0.106* | 3 | D | D | AT2G23770.1 | LYK4 |
PavLYK4/5c1 | 1836 | 612aa | 68.08 kDa | 6.1 | 0.011 | 1 | D | D | AT2G23770.1 | LYK4 |
PavLYM1/3–1 | 1275 | 425aa | 44.24 kDa | 6.32 | 0.324 | 5 | D | D | AT1G21880.2 | LYM1 |
PavLYM1/3–2 | 1194 | 398aa | 42.74 kDa | 6.02 | 0.095 | 5 | D | D | AT1G21880.2 | LYM1 |
PavLYM2–1 | 1089 | 363aa | 38.78 kDa | 7.7* | 0.108 | 4 | D | D | AT2G17120.1 | LYM2 |
PavNFP1 | 1455 | 485aa | 53.72 kDa | 8.02* | −0.094* | 2 | D | D | AT2G23770.1 | LYK4 |
PavNFP2 | 1857 | 619aa | 68.76 kDa | 8.13* | 0.012 | 1 | D | D | AT2G33580.1 | LYK5 |
PavWAKL1 | 921 | 307aa | 33.36 kDa | 7.97* | 0.097 | 1 | D | D | AT2G33580.1 | LYK5 |
PavWAKL2 | 828 | 276aa | 30.46 kDa | 8.75* | −0.103* | 3 | D | D | AT2G23770.1 | LYK4 |
PbrLYK1a | 1878 | 626aa | 68.85 kDa | 6.31 | −0.088* | 12 | D |  | AT3G21630.1 | LYK1 |
PbrLYK1b1 | 1563 | 521aa | 57.39 kDa | 7.51* | −0.188* | 9 | D | D | AT3G21630.1 | LYK1 |
PbrLYK1b2 | 1800 | 600aa | 65.81 kDa | 5.97 | −0.137* | 10 | D | D | AT3G21630.1 | LYK1 |
PbrLYK1b3 | 1698 | 566aa | 61.85 kDa | 8.5* | −0.199* | 13 | D |  | AT3G21630.1 | LYK1 |
PbrLYK2 | 2076 | 692aa | 75.39 kDa | 6.74 | −0.084* | 1 | D | D | AT3G01840.1 | LYK2 |
PbrLYK3a1 | 1896 | 632aa | 69.70 kDa | 6.73 | −0.106* | 11 | D | D | AT1G51940.1 | LYK3 |
PbrLYK3a2 | 1896 | 632aa | 69.64 kDa | 6.85 | −0.108* | 11 | D | D | AT1G51940.1 | LYK3 |
PbrLYK3b1 | 1845 | 615aa | 68.86 kDa | 6.43 | −0.12* | 10 | D | D | AT1G51940.1 | LYK3 |
PbrLYK4/5a1 | 1989 | 663aa | 72.36 kDa | 5.07 | −0.057* | 1 | D | D | AT2G23770.1 | LYK4 |
PbrLYK4/5b | 1428 | 476aa | 52.71 kDa | 7.34* | −0.05* | 1 | D |  | AT2G23770.1 | LYK4 |
PbrLYM1/3–1 | 1263 | 421aa | 43.73 kDa | 5.99 | 0.343 | 5 | D | D | AT1G21880.2 | LYM1 |
PbrLYM1/3–2 | 1188 | 396aa | 42.09 kDa | 6.48 | 0.222 | 5 | D | D | AT1G21880.2 | LYM1 |
PbrLYM1/3–3 | 1254 | 418aa | 43.48 kDa | 5.53 | 0.361 | 5 | D | D | AT1G21880.2 | LYM1 |
PbrLYM2–1 | 1077 | 359aa | 38.51 kDa | 7.29* | 0.149 | 4 | D | D | AT2G17120.1 | LYM2 |
PbrLYM2–2 | 1134 | 378aa | 40.55 kDa | 8.24* | 0.165 | 4 | D | D | AT2G17120.1 | LYM2 |
PbrNFP1 | 1887 | 629aa | 69.18 kDa | 6.51 | −0.066* | 2 | D | D | AT2G23770.1 | LYK4 |
PbrNFP2 | 1860 | 620aa | 69.04 kDa | 8.3* | 0.011 | 1 | D | D | AT2G33580.1 | LYK5 |
PbrWAKL1 | 1938 | 646aa | 72.04 kDa | 5.97 | −0.148* | 2 | D | D | AT1G16130.1 | WAKL2 |
PcoLYK1a | 1785 | 595aa | 65.41 kDa | 5.93 | −0.09* | 11 | D |  | AT3G21630.1 | LYK1 |
PcoLYK2 | 2076 | 692aa | 75.44 kDa | 6.81 | −0.088* | 1 | D | D | AT3G01840.1 | LYK2 |
PcoLYK3a1 | 1893 | 631aa | 69.78 kDa | 6.73 | −0.122* | 11 | D | D | AT1G51940.1 | LYK3 |
PcoLYK3a2 | 2472 | 824aa | 90.91 kDa | 6.64 | −0.179* | 14 | D | D | AT1G51940.1 | LYK3 |
PcoLYK3b1 | 2805 | 935aa | 106.20 kDa | 5.58 | −0.211* | 20 | D | D | AT1G60780.1 | HAPLESS 13 |
PcoLYK3b2 | 1830 | 610aa | 68.88 kDa | 5.85 | −0.242* | 7 | D | D | AT1G51940.1 | LYK3 |
PcoLYK4/5c1 | 1845 | 615aa | 68.30 kDa | 6.5 | 0.015 | 1 | D | D | AT2G23770.1 | LYK4 |
PcoLYKb1 | 1881 | 627aa | 68.55 kDa | 5.4 | −0.124* | 12 | D | D | AT3G21630.1 | LYK1 |
PcoLYKb2 | 1782 | 594aa | 65.09 kDa | 5.51 | −0.111* | 10 | D | D | AT3G21630.1 | LYK1 |
PcoLYM1/3–1 | 1260 | 420aa | 43.74 kDa | 6.32 | 0.335 | 5 | D | D | AT1G21880.2 | LYM1 |
PcoLYM1/3–2 | 1185 | 395aa | 42.11 kDa | 6.48 | 0.199 | 5 | D | D | AT1G21880.2 | LYM1 |
PcoLYM2–1 | 1368 | 456aa | 48.61 kDa | 4.67 | 0.295 | 7 | D | D | AT2G17120.1 | LYM2 |
PcoWAKL1 | 3732 | 1244aa | 138.78 kDa | 5.9 | −0.202* | 5 | D | D | AT1G16130.1 | WAKL2 |
PcoWAKL2 | 1938 | 646aa | 72.10 kDa | 6.07 | −0.164* | 2 | D | D | AT1G16130.1 | WAKL2 |
PmLYK1a | 1857 | 619aa | 68.14 kDa | 6.37 | −0.009* | 12 | D |  | AT3G21630.1 | LYK1 |
PmLYK1b1 | 1827 | 609aa | 66.66 kDa | 6.43 | −0.106* | 12 | D | D | AT3G21630.1 | LYK1 |
PmLYK1b2 | 1845 | 615aa | 67.51 kDa | 5.38 | −0.085* | 12 | D | D | AT3G21630.1 | LYK1 |
PmLYK2 | 2088 | 696aa | 76.31 kDa | 7.03* | −0.086* | 1 | D | D | AT3G01840.1 | LYK2 |
PmLYK3a1 | 1980 | 660aa | 72.77 kDa | 6.31 | −0.052* | 11 | D | D | AT1G51940.1 | LYK3 |
PmLYK3b1 | 1854 | 618aa | 69.19 kDa | 5.9 | −0.092* | 10 | D | D | AT1G51940.1 | LYK3 |
PmLYK4/5a1 | 1995 | 665aa | 72.37 kDa | 6.91 | −0.076* | 1 | D | D | AT2G33580.1 | LYK5 |
PmLYK4/5a2 | 1980 | 660aa | 72.78 kDa | 5.24 | −0.13* | 1 | D | D | AT2G23770.1 | LYK4 |
PmLYK4/5b | 1908 | 636aa | 70.84 kDa | 5.62 | −0.021* | 1 | D |  | AT2G23770.1 | LYK4 |
PmLYK4/5c1 | 1845 | 615aa | 68.61 kDa | 6.63 | 0.028 | 1 | D | D | AT2G23770.1 | LYK4 |
PmLYM1/3–1 | 1275 | 425aa | 44.56 kDa | 5.98 | 0.309 | 5 | D | D | AT1G21880.2 | LYM1 |
PmLYM1/3–2 | 1194 | 398aa | 42.71 kDa | 5.82 | 0.124 | 5 | D | D | AT1G21880.2 | LYM1 |
PmLYM2–1 | 1110 | 370aa | 39.57 kDa | 6.47 | 0.131 | 4 | D | D | AT2G17120.1 | LYM2 |
PmNFP1 | 1878 | 626aa | 69.89 kDa | 6.92 | −0.098* | 2 | D | D | AT2G23770.1 | LYK4 |
PmNFP2 | 1854 | 618aa | 68.99 kDa | 8.19* | −0.007* | 1 | D | D | AT2G33580.1 | LYK5 |
PmWAKL1 | 2076 | 692aa | 77.10 kDa | 7.28* | −0.133* | 2 | D | D | AT1G16130.1 | WAKL2 |
PpeLYK1a | 1821 | 607aa | 66.68 kDa | 6.27 | 0.018 | 10 | D |  | AT3G21630.1 | LYK1 |
PpeLYK1b1 | 1836 | 612aa | 66.63 kDa | 6.36 | −0.135* | 12 | D | D | AT3G21630.1 | LYK1 |
PpeLYK2 | 2004 | 668aa | 73.24 kDa | 6.77 | −0.174* | 1 | D | D | AT3G01840.1 | LYK2 |
PpeLYK3a1 | 1908 | 636aa | 70.35 kDa | 6.67 | −0.021* | 10 | D | D | AT1G51940.1 | LYK3 |
PpeLYK3b1 | 1689 | 563aa | 62.86 kDa | 6.04 | −0.109* | 9 | D | D | AT1G51940.1 | LYK3 |
PpeLYK4/5a1 | 1983 | 661aa | 72.33 kDa | 4.98 | −0.125* | 1 | D | D | AT2G23770.1 | LYK4 |
PpeLYK4/5a2 | 2409 | 803aa | 87.75 kDa | 7.1* | −0.091* | 3 | D | D | AT2G33580.1 | LYK5 |
PpeLYK4/5b | 2058 | 686aa | 76.08 kDa | 5.71 | −0.062* | 2 | D | D | AT2G33580.1 | LYK5 |
PpeLYK4/5c1 | 1848 | 616aa | 68.58 kDa | 6.9 | 0.014 | 1 | D | D | AT2G23770.1 | LYK4 |
PpeLYM1/3–1 | 1278 | 426aa | 44.26 kDa | 5.98 | 0.324 | 5 | D | D | AT1G21880.2 | LYM1 |
PpeLYM1/3–2 | 972 | 324aa | 34.79 kDa | 6.62 | 0.171 | 4 | D | D | AT1G21880.1 | LYM1 |
PpeLYM2–1 | 1038 | 346aa | 36.84 kDa | 7.13* | 0.125 | 3 | D | D | AT2G17120.1 | LYM2 |
PpeNFP1 | 1881 | 627aa | 69.66 kDa | 7.26* | −0.081* | 2 | D | D | AT2G23770.1 | LYK4 |
PpeNFP2 | 1860 | 620aa | 68.93 kDa | 8.35* | −0.009* | 1 | D | D | AT2G33580.1 | LYK5 |
PpeWAKL1 | 1848 | 616aa | 68.83 kDa | 7.02* | −0.19* | 3 | D | D | AT1G16130.1 | WAKL2 |
RoLYK1a | 1833 | 611aa | 67.26 kDa | 6.13 | 0.013 | 9 | D | D | AT3G21630.1 | LYK1 |
RoLYK1b1 | 2466 | 822aa | 90.99 kDa | 5.32 | −0.044* | 13 | D | D | AT3G21630.1 | LYK1 |
RoLYK1b2 | 1779 | 593aa | 65.27 kDa | 5.96 | −0.027* | 10 | D | D | AT3G21630.1 | LYK1 |
RoLYK2 | 2814 | 938aa | 102.59 kDa | 6.65 | −0.03* | 8 | D | D | AT3G01840.1 | LYK2 |
RoLYK3a1 | 2070 | 690aa | 76.39 kDa | 6.5 | −0.029* | 13 | D | D | AT1G51940.1 | LYK3 |
RoLYK3b1 | 1815 | 605aa | 67.14 kDa | 5.94 | 0.012 | 10 | D | D | AT1G51940.1 | LYK3 |
RoLYK4/5a1 | 1980 | 660aa | 71.61 kDa | 6.28 | −0.099* | 1 | D | D | AT2G33580.1 | LYK5 |
RoLYK4/5b | 3765 | 1255aa | 139.28 kDa | 7.69* | −0.105* | 2 | D | D | AT2G23770.1 | LYK4 |
RoLYK4/5c1 | 1926 | 642aa | 71.38 kDa | 6.76 | −0.004* | 2 | D | D | AT2G23770.1 | LYK4 |
RoLYM1/3–1 | 1260 | 420aa | 43.57 kDa | 4.67 | 0.262 | 6 | D | D | AT1G21880.2 | LYM1 |
RoLYM1/3–2 | 1311 | 437aa | 47.21 kDa | 7.97* | 0.03 | 5 | D | D | AT1G21880.2 | LYM1 |
RoLYM2–1 | 2637 | 879aa | 95.20 kDa | 8.24* | 0.244 | 17 | D | D | AT4G38380.1 | MATE efflux family protein |
RoNFP1 | 3606 | 1202aa | 135.40 kDa | 8.21* | −0.118* | 2 | D | D | AT5G66631.1 | Tetratricopeptide repeat like superfamily protein |