Accurate prediction of DNA N4-methylcytosine sites via boost-learning various types of sequence features

BMC Genomics

Table 3 Cross Validation Result on Benchmark Datasets (Sn, Sp and ACC:%; TP: true positive, FN: false negative, FP: false positive, TN: true negative)

Datasets	Methods	Sn	Sp	ACC	MCC	TP	FN	FP	TN
	iDNA4mC	79.7	77.5	78.6	0.572	1328	316	349	1205
C.elegans	4mCPred	82.5	82.6	82.6	0.652	1282	272	270	1284
	4mCPred_SVM	82.4	80.7	81.5	0.631	1280	274	300	1254
	this study	84.9	80.4	82.6	0.653	1319	235	305	1249
	iDNA4mC	83.3	79.1	81.2	0.625	1474	295	369	1400
D.melanogaster	4mCPred	82.4	82.1	82.2	0.646	1458	311	317	1452
	4mCPred_SVM	83.8	82.2	83.0	0.661	1483	286	314	1455
	this study	85.4	83.2	84.3	0.686	1510	259	297	1472
	iDNA4mC	75.7	76.2	76.0	0.519	1498	480	471	1507
A.thaliana	4mCPred	75.5	78.0	76.8	0.536	1494	484	435	1543
	4mCPred_SVM	77.8	79.6	78.7	0.573	1538	440	404	1574
	this study	78.3	80.5	79.4	0.589	1549	429	385	1593
	iDNA4mC	82.0	77.8	79.9	0.598	318	70	86	302
E.coli	4mCPred	81.9	83.2	82.6	0.655	318	70	65	302
	4mCPred_SVM	85.8	80.7	83.3	0.666	333	51	67	321
	this study	86.1	82.5	84.3	0.686	334	54	68	320
	iDNA4mC	82.2	80.8	81.5	0.630	745	161	174	732
G.subterraneus	4mCPred	81.8	83.7	82.8	0.662	742	164	148	758
	4mCPred_SVM	84.0	83.4	83.7	0.674	760	145	150	755
	this study	83.6	85.7	84.7	0.694	757	148	129	776
	iDNA4mC	82.4	83.8	83.1	0.663	469	100	92	477
G.pickeringii	4mCPred	85.0	81.0	83.0	0.668	484	85	108	461
	4mCPred_SVM	86.3	85.8	86.0	0.721	491	78	81	488
	this study	86.3	89.1	87.7	0.754	491	78	62	507

ISSN: 1471-2164