Fig. 5

Pan genomes of the hybrid assemblies of Salmonella Typhimurium LT2 with simulated Illumina short reads and mediocre- or low-quality Oxford Nanopore long reads using MaSuRCA (mediocre-quality, a low-quality, d, SPAdes (mediocre-quality, b low-quality, e, and Unicycler (mediocre-quality, c low-quality, f) and 20 S. Typhimurium strains compared to the reference genome (g)