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Table 7 Numbers of virulence genes of bacterial strains with simulated Illumina short reads and low-quality Oxford Nanopore long reads, as predicted based on their MaSuRCA, SPAdes, and Unicycler assemblies

From: Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing

Strain Number of virulence genes
MaSuRCA SPAdes Unicycler
Pseudomonas aeruginosa PAO1 184 184 184
Escherichia coli O157:H7 Sakai 110 128 128
Bacillus anthracis Ames Ancestor 13 13 13
Klebsiella variicola DSM 15968 10 10 10
Salmonella Typhimurium LT2 107 117 118
Cronobacter sakazakii ATCC 29544 2 2 2
Clostridium botulinum CDC_1632 0 0 0
Listeria monocytogenes EGD-e 32 32 32
Staphylococcus aureus NCTC 8325 62 63 63
Campylobacter jejuni NCTC 11168 118 119 118