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Table 8 Numbers of virulence genes of bacterial strains with real Illumina short reads and Oxford Nanopore long reads, as predicted based on their MaSuRCA, SPAdes, and Unicycler assemblies and compared to their corresponding reference genomes

From: Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing

Strain Numbers of virulence genes
MaSuRCA SPAdes Unicycler Reference
Escherichia coli O26:H11 CFSAN027343 115 115 114 121
Escherichia coli O26:H11 CFSAN027350 110 108 109 115
Klebsiella variicola CFSAN086180 10 10 10 10
Klebsiella pneumonia CFSAN086181 10 10 10 10
Enterobacter cancerogenus CFSAN086183 15 15 15 16
Salmonella Bareilly CFSAN000189 109 109 109 111
Citrobacter braakii CFSAN086182 23 23 23 22
Cronobacter sakazakii CFSAN068773 2 2 2 4
Listeria monocytogenes CFSAN008100 31 31 31 32
Staphylococcus aureus CFSAN007894 63 63 63 63
Campylobacter jejuni CFSAN032806 104 105 104 107
Campylobacter coli CFSAN032805 76 76 76 77