Fig. 3
From: Long-read sequencing and de novo genome assembly of marine medaka (Oryzias melastigma)
Landscapes of repeat sequence among three assemblies (a) previous O.melastigma assembly. b new version of O.melastigma assembly. c O.latipes. Kimura distance-based copy divergence analysis of transposable elements in O. latipes, previous O. melastigma and current assembly (Kimura substitution level – CpG adjusted). The graphs represent genome coverage (y-axis) for each type of TEs (DNA transposons, SINE, LINE, LTR retrotransposons and Unknown) in the different genomes analyzed, clustered according to Kimura distances to their corresponding consensus sequence (x-axis, K-value from 0 to 60). Copies clustering on the left of the graph do not diverge very much from the consensus sequence of the element and potentially correspond to recent copies, while sequences on the right might correspond to ancient/degenerated copies