Table 3 Comparison of previous and new O. melastigma assemblies on genomic sequences level
From: Long-read sequencing and de novo genome assembly of marine medaka (Oryzias melastigma)
Assembly | Previous assembly | New assembly | ||
|---|---|---|---|---|
Contig | Scaffold | Contig | Scaffold | |
Total size (bp) | 738,232,102 | 779,469,774 | 835,406,597 | 844,166,318 |
Number | 59,792 | 8603 | 2588 | 1257 |
Longest (bp) | 268,000 | 37,948,421 | 5,175,882 | 8,672,543 |
Mean (bp) | 12,346 | 90,604 | 322,800 | 671,572 |
N50 | 28,594 | 23,737,187 | 707,795 | 1,709,016 |
%N | 0 | 5.29 | 0 | 1.04 |
Number of gaps | 0 | 51,440 | 0 | 1331 |
Total gap size (bp) | 0 | 41,237,672 | 0 | 8,759,721 |