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Table 2 Number of mRNAs regulated by lncRNAs in the hormone biosynthesis and signal transduction pathways

From: Genome-wide analysis of lncRNA and mRNA expression and endogenous hormone regulation during tension wood formation in Catalpa bungei

Pathway Description Pathway ID The pattern of lncRNA regulation
Cis Trans Antisense
Carotenoid biosynthesis ABA biosynthesis ko00906 16 (0.75%) 9 (1.39%) 2 (1.28%)
Brassinosteroid biosynthesis BR biosynthesis ko00905 5 (0.23%) 3 (0.46%) 1 (0.64%)
Cysteine and methionine metabolism ETH biosynthesis ko00270 29 (1.35%) 10 (1.55%) 3 (1.92%)
Diterpenoid biosynthesis GA biosynthesis ko00904 12 (0.56%) 5 (0.77%) 0
Tryptophan metabolism IAA biosynthesis ko00380 19 (0.88%) 6 (0.93%) 0
alpha-Linolenic acid metabolism JA biosynthesis ko00592 24 (1.12%) 10 (1.55%) 4 (2.56%)
Phenylalanine metabolism SA biosynthesis ko00360 16 (0.75%) 8 (1.24%) 3 (1.92%)
Zeatin biosynthesis ZT biosynthesis ko00908 12 (0.56%) 5 (0.77%) 1 (0.64%)
Plant hormone signal transduction Hormone signal transduction ko04075 113 (5.26%) 37 (5.72%) 15 (9.62%)