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Table 2 Number of mRNAs regulated by lncRNAs in the hormone biosynthesis and signal transduction pathways

From: Genome-wide analysis of lncRNA and mRNA expression and endogenous hormone regulation during tension wood formation in Catalpa bungei

Pathway

Description

Pathway ID

The pattern of lncRNA regulation

Cis

Trans

Antisense

Carotenoid biosynthesis

ABA biosynthesis

ko00906

16 (0.75%)

9 (1.39%)

2 (1.28%)

Brassinosteroid biosynthesis

BR biosynthesis

ko00905

5 (0.23%)

3 (0.46%)

1 (0.64%)

Cysteine and methionine metabolism

ETH biosynthesis

ko00270

29 (1.35%)

10 (1.55%)

3 (1.92%)

Diterpenoid biosynthesis

GA biosynthesis

ko00904

12 (0.56%)

5 (0.77%)

0

Tryptophan metabolism

IAA biosynthesis

ko00380

19 (0.88%)

6 (0.93%)

0

alpha-Linolenic acid metabolism

JA biosynthesis

ko00592

24 (1.12%)

10 (1.55%)

4 (2.56%)

Phenylalanine metabolism

SA biosynthesis

ko00360

16 (0.75%)

8 (1.24%)

3 (1.92%)

Zeatin biosynthesis

ZT biosynthesis

ko00908

12 (0.56%)

5 (0.77%)

1 (0.64%)

Plant hormone signal transduction

Hormone signal transduction

ko04075

113 (5.26%)

37 (5.72%)

15 (9.62%)