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Table 2 Within and between population genetic diversity for the main chromosome and plasmid orthologous regions

From: High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis

Genomic region

# Asia

# Europe

Length (bp)

# SNP

π Asia

π Europe

FST

chromosome

17

19

920,528

42,039

8.79*10− 3

1.72*10− 4

0.56

cp26

15

19

29,623

1979

1.54*10−2

1.99*10−4

0.50

lp17

14

19

13,732

1331

1.98*10−2

4.99*10−4

0.49

lp25

13

18

27,833

3232

2.97*10−2

7.03*10−4

0.36

lp28-3

11

19

11,152

1572

6.80*10−2

8.23*10−4

0.50

lp28-4

14

18

31,849

4144

2.05*10−2

2.62*10−3

0.52

lp36

14

19

9819

1081

2.34*10−2

3.66*10−4

0.69

lp54

15

19

67,261

8167

2.06*10−2

3.47*10−4

0.59

  1. Genetic diversity (π [44]⁠) within populations and genetic distance (FST [45]⁠) between populations were estimated on orthologous sequences aligned with MAFFT v 7.407 [46, 47]⁠. The number of single nucleotide polymorphisms (SNP) is indicated for both populations mixed and the length is the length of the alignment
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BMC Genomics

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