Full-length genome sequence of segmented RNA virus from ticks was obtained using small RNA sequencing data

BMC Genomics

Table 1 Genome coverage and average depth of the MGTV strain Yunnan2016

Data	Tick	Reference	Coverage	Depth
SRR4116826	Amblyomma. testudinarium	Xinjiang2016	86.47%	46.52
SRR4116826	Amblyomma. testudinarium	Yunnan2016	97.37%	91.11
SRR8439389 SRR8439390	Dermacentor. nuttalli	Yunnan2016	18.40%	2.58
SRR8432408	D. niveus	Yunnan2016	18.62%	2.91
SRR8432409	D. niveus	Yunnan2016	20.72%	2.94
SRR811197093	D. silvarum	Yunnan2016	24.38%	10.31
SRR811197094	D. silvarum	Yunnan2016	8.11%	4.22

“Data” (the first column) was aligned to the reference genome (the 3rd column) to obtain the information on the fourth and fifth columns. “Data” was unique for each run of sRNA-seq data in the NCBI SRA database. The virus strain Yunnan2016 (GenBank: MT080097, MT080098, MT080099 and MT080100) was detected in the present study. The reference genome of the MGTV strain Xinjiang2016 (GenBank: MK174251, MK174244, MK174230 and MK174237) was used to report Yunnan2016. “Coverage” and “Depth” indicated the genome coverage and average depth, respectively (Refer to Methods)

ISSN: 1471-2164