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Table 1 Repetitive elements in the Siberian larch mitogenome annotated using RepeatMasker, TEclass, and RepeatModeler with RepBase, MIPS-REdat, CPRD, PIER v1.0, and de novo libraries

From: Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known mitogenome

Type Group Superfamily (Clade) Length, bp %
Class I LTR retrotransposon Copia 45,496 0.385
DIRS 1745 0.015
Gymny 2085 0.018
Gypsy 70,511 0.597
Other 359,085 3.039
Total 478,922 4.054
non-LTR retrotransposon LINE 241,900 2.047
SINE 13,436 0.114
Penelope 983 0.008
I 48,868 0.414
Other 2547 0.022
Total 307,734 2.605
Unclassified retrotransposon 69,015 0.584
Class II DNA transposons EnSpm 509 0.004
Harbinger 50 0.0004
hAT 1525 0.013
Helitron 1054 0.009
Maverick (Polinton) 18 0.0001
MuDR 57 0.0002
TcMar 78 0.001
TIR 3459 0.029
Other 71,174 0.602
Total 77,924 0.658
Low complexity regions 10,177 0.086
rRNA 18,009 0.152
Simple repeats 93,903 0.795
Unknown 261,098 2.210
Grand Total 1,316,782 11.144
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