Type | Group | Superfamily (Clade) | Length, bp | % |
---|---|---|---|---|
Class I | LTR retrotransposon | Copia | 45,496 | 0.385 |
DIRS | 1745 | 0.015 | ||
Gymny | 2085 | 0.018 | ||
Gypsy | 70,511 | 0.597 | ||
Other | 359,085 | 3.039 | ||
Total | 478,922 | 4.054 | ||
non-LTR retrotransposon | LINE | 241,900 | 2.047 | |
SINE | 13,436 | 0.114 | ||
Penelope | 983 | 0.008 | ||
I | 48,868 | 0.414 | ||
Other | 2547 | 0.022 | ||
Total | 307,734 | 2.605 | ||
Unclassified retrotransposon | 69,015 | 0.584 | ||
Class II | DNA transposons | EnSpm | 509 | 0.004 |
Harbinger | 50 | 0.0004 | ||
hAT | 1525 | 0.013 | ||
Helitron | 1054 | 0.009 | ||
Maverick (Polinton) | 18 | 0.0001 | ||
MuDR | 57 | 0.0002 | ||
TcMar | 78 | 0.001 | ||
TIR | 3459 | 0.029 | ||
Other | 71,174 | 0.602 | ||
Total | 77,924 | 0.658 | ||
Low complexity regions | 10,177 | 0.086 | ||
rRNA | 18,009 | 0.152 | ||
Simple repeats | 93,903 | 0.795 | ||
Unknown | 261,098 | 2.210 | ||
Grand Total | 1,316,782 | 11.144 |