Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known mitogenome

Table 2 Plasmid-like inserts in the Siberian larch mitogenome

Contig		*Picea abies* ^a		Broad host range plasmids (NCBI GenBank taxid:36549)
#	length, bp	N	A	highly similar sequences (megablast)	more dissimilar sequences (discontiguous megablast)		somewhat similar sequences (blastn)
#	length, bp	N	A	N	N^c	A	N^d	A	% of total
1	4,008,762	1^b	42	none	2	206	50	2038	0.05
2	3,031,766	none	–	none	3	269	66	2387	0.08
3	2,293,716	none	–	none	none	–	69	2397	0.10
4	1,382,651	none	–	none	none	–	52	1946	0.14
5	469,276	none	–	none	none	–	17	463	0.10
6	204,181	none	–	none	none	–	51	1829	0.90
7	142,269	none	–	none	2	206	16	481	0.34
8	105,151	none	–	none	none	–	34	1107	1.05
9	24,767	none	–	none	1	49	11	292	1.18
Total	11,662,539	1	42	0	8	730	366	12,940	0.11

N - number of matching sites; A - alignment length, bp
^aPicea abies mitochondrial plasmid-like DNA (NCBI GenBank accession number AJ225562)
^bone short site 608,296–608,337 with identity 100%
^ccontig 1: two sites 2,426,685–2,426,787 and 724,520–724,622, both matching Z34929 with identity 78%; contig 2: three sites 1,294,914–1,295,016 and 865,049–865,151, both matching Z34929 with identity 78%, and 738,551–738,613 matching CP021634 with identity 78%; contig 7: two sites 127,403–127,505 and 37,625–37,727, both matching Z34929 with identity 78%; contig 9: one site 4507–4555 (84%, CP021611)
^dData on plasmids matching inserts in contigs and their NCBI GenBank accession numbers are provided in Additional file 2

ISSN: 1471-2164