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Table 2 Distinct functional protein orthologs associated with clade of 5 L. rhamnosus clinical isolates in comparison to L. rhamnosus BPL5, L. rhamnosus BPL15 and the rest of the L. rhmanouss genomes

From: Intra-species variation within Lactobacillus rhamnosus correlates to beneficial or harmful outcomes: lessons from the oral cavity

Description

Protein ID

# L. rhamnosus Species

4-hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase

WP_005717709.1

77

ABC-2 transporter permease

WP_005715415.1

164

AbrB/MazE/SpoVT family DNA-binding domain-containing protein

WP_005715999.1

54

alpha-L-fucosidase

WP_005717725.1

81

alpha/beta hydrolase

WP_005715325.1

152

AraC family transcriptional regulator

WP_005714953.1

60

bacteriocin

WP_076638842.1

59

beta-galactosidase subunit alpha

WP_005714949.1

68

BREX system Lon protease-like protein BrxL

WP_005686196.1

91

BREX system P-loop protein BrxC

WP_005715305.1

89

BREX-1 system phosphatase PglZ type A

WP_005686195.1

87

carbohydrate PTS IIA component

WP_005715915.1

76

cytosine permease

WP_005715299.1

146

DNA helicase

WP_049168901.1

44

DUF1788 domain-containing protein (brxB)

WP_005684780.1

82

DUF1819 domain-containing protein (brxA)

WP_005684779.1

82

DUF2568 domain-containing protein

WP_005716418.1

53

DUF262 domain-containing protein sp. HMSC077C11

WP_070586510.1

91

DUF2620 domain-containing protein

WP_005714931.1

37

DUF2992 domain-containing protein

WP_005685750.1

97

DUF917 domain-containing protein

WP_005715298.1

151

galactonate dehydratase

WP_005717713.1

77

GntR family transcriptional regulator

WP_005717726.1

78

helix-turn-helix domain-containing protein (Rgg/GadR/MutR family transcriptional regulator)

WP_032954331.1

45

HXXEE domain-containing protein

WP_005716405.1

80

hydantoinase/oxoprolinase family protein

WP_005715297.1

144

L-fucose isomerase

WP_005717692.1

74

membrane protein

WP_005714932.1

38

MerR family transcriptional regulator sp. HMSC077C11

WP_070586464.1

53

metal-independent alpha-mannosidase

WP_005717706.1

73

N-acetyltransferase

WP_005715414.1

164

nucleoside-diphosphate sugar epimerase

WP_005717601.1

32

phosphotriesterase-related protein sp. HMSC077C11

WP_070586459.1

41

PRD domain-containing protein

WP_032954335.1

21

PRD domain-containing protein

WP_005714930.1

37

pyridoxamine 5-phosphate oxidase family protein

WP_015764910.1

67

SDR family NAD(P)-dependent oxidoreductase

WP_005684771.1

152

SEC10/PgrA surface exclusion domain-containing protein sp. HMSC077C11

WP_070586541.1

35

thymidylate synthase

WP_032954600.1

96

transaldolase

WP_005714910.1

37

transketolase

WP_005714895.1

43

type 1 glutamine amidotransferase domain-containing protein

WP_005717600.1

31

type III restriction protein res subunit (DEAD/DEAH box helicase)

WP_005716818.1

69

YhfX family PLP-dependent enzyme

WP_005714936.1

38