Table 4 Genome features of L. rhamnosus strains in this study
L. rhamnosus / Lactobacillus spp. | Source | Genome | BioProject / GenBank reference | Genome size (Mbp) | No. of genes | Proteins | Release year | Sequencing technology | Coverage |
|---|---|---|---|---|---|---|---|---|---|
Lactobacillus rhamnosus LRHMDP2 | Oral / Dental pulp | contig | PRJNA169251/ AMQW00000000.1 | 2.91 | 2967 | 2824 | 2012 | Roche GS FLX+ | 17x |
Lactobacillus rhamnosus LRHMDP3 | Oral / Dental pulp | contig | PRJNA169313 / AMQX00000000.1 | 2.91 | 2985 | 2835 | 2012 | Roche GS FLX+ | 17x |
Lactobacillus rhamnosus 699_LRHA | ICU / Bronchoalveolar lavage | contig | PRJNA267549 / JUWQ00000000.1 | 2.95 | 2977 | 2791 | 2015 | Illumina (HiSeq-MiSeq) | 53x |
Lactobacillus rhamnosus 708_LRHA | ICU / Bronchoalveolar lavage | contig | PRJNA267549 / JUWG00000000.1 | 2.96 | 3001 | 2813 | 2015 | Illumina (HiSeq-MiSeq) | 53x |
Lactobacillus spp. HMSC077C11a | Neck abscess | Contig | PRJNA296298 / LTIR00000000.1 | 2.89 | 2897 | 2730 | 2016 | Illumina | 138x |
L. rhamnosus BPL5 | Vagina of healthy women | complete | PRJNA224116 / NZ-LT220504.1 | 3.02 | 3042 | 2854 | 2016 | PacBio (SMRT) | 178x |
L. rhamnosus BPL15 | – | Contig | PRJEB4890 / CBZU000000000.1 | 3.01 | 3002 | 2829 | 2015 | – | – |