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Table 2 Summary of reads mapped to the ovine genome

From: Differentially expressed genes in cotyledon of ewes fed mycotoxins

  E−/E- Fescue Treatment E+/E+ Fescue Treatment
Sample C1 C2 C3 T1 T2 T3
Raw Reads 10,576,330 10,770,727 8,425,934 10,988,240 9,267,649 10,034,493
Clean Reads 8,656,393 8,696,340 7,199,597 9,402,716 8,308,713 8,386,543
Total Mappeda 6,737,569 6,728,913 6,737,780 6,743,454 6,744,853 6,737,461
Mappedb% 98.29 98.16 98.29 98.37 98.40 98.29
Annotatedc, % 43.26 43.38 42.65 44.74 45.15 43.95
  1. a Total mapped reads after downsampling
  2. bIncludes reads that aligned to the ovine reference genome. In the case of multimapped reads, each read was counted once
  3. cIncludes reads that were aligned to annotated genes in the reference genome