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Table 2 Summary of reads mapped to the ovine genome

From: Differentially expressed genes in cotyledon of ewes fed mycotoxins

 

E−/E- Fescue Treatment

E+/E+ Fescue Treatment

Sample

C1

C2

C3

T1

T2

T3

Raw Reads

10,576,330

10,770,727

8,425,934

10,988,240

9,267,649

10,034,493

Clean Reads

8,656,393

8,696,340

7,199,597

9,402,716

8,308,713

8,386,543

Total Mappeda

6,737,569

6,728,913

6,737,780

6,743,454

6,744,853

6,737,461

Mappedb%

98.29

98.16

98.29

98.37

98.40

98.29

Annotatedc, %

43.26

43.38

42.65

44.74

45.15

43.95

  1. a Total mapped reads after downsampling
  2. bIncludes reads that aligned to the ovine reference genome. In the case of multimapped reads, each read was counted once
  3. cIncludes reads that were aligned to annotated genes in the reference genome
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BMC Genomics

ISSN: 1471-2164

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