Table 5 Motif enrichment in consensus open chromatin. Top ten enriched known binding motifs identified from the merged set of consensus peaks in each species
From: A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues
Cattle consensus peaks | Pig consensus peaks | ||||
|---|---|---|---|---|---|
Motif | P-value | Peaks with motif (%) | Motif | P-value | Peaks with motif (%) |
CTCF (Zf) | 1e-2891 | 8.66 | CTCF (Zf) | 1e-2587 | 8.16 |
BORIS (Zf) | 1e-1695 | 11.56 | BORIS (Zf) | 1e-1580 | 10.90 |
NF1(CTF) | 1e-505 | 16.51 | Jun-AP1Â (bZIP) | 1e-784 | 8.25 |
Sp1Â (Zf) | 1e-389 | 8.60 | Fosl2Â (bZIP) | 1e-769 | 11.25 |
CEBP (bZIP) | 1e-334 | 14.00 | Fra1Â (bZIP) | 1e-718 | 16.30 |
ETS (ETS) | 1e-278 | 9.70 | Sp1Â (Zf) | 1e-639 | 8.16 |
NRF1Â (NRF) | 1e-276 | 3.09 | BATF (bZIP) | 1e-624 | 18.32 |
RFX (HTH) | 1e-272 | 2.75 | Mef2d (MADS) | 1e-583 | 6.00 |
Rfx2Â (HTH) | 1e-264 | 3.07 | Atf3Â (bZIP) | 1e-576 | 19.02 |
Mef2d (MADS) | 1e-257 | 4.82 | Mef2c (MADS) | 1e-502 | 11.63 |