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Table 1 Assembly details of Japanese sardine (Sardinops melanostictus) brain–pituitary–gonadal (BPG) axis transcriptome

From: Transcriptome characterization of BPG axis and expression profiles of ovarian steroidogenesis-related genes in the Japanese sardine

Assembly

 Number of contigs

290,119

 Total bases (bp)

201,987,287

 Longest contig length (bp)

18,202

 Shortest contig length (bp)

203

 Average of contig length (bp)

696

 N50

1165

Extraction of ORFs

 Number of non-redundant ORFs

115,173

 Complete ORFs

47,886

 Internal ORFs

24,524

 5′ partial ORFs

30,603

 3′ partial ORFs

12,160

Homology search against below organisms

 Atlantic herring (Clupea harengus)

47,201a

 Zebrafish (Danio rerio)

46,335a

 Medaka (Oryzias latipes)

45,307a

  1. aNumber of protein sequences