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Table 1 Characteristics of the candidate pop-CpGs

From: Discrimination between human populations using a small number of differentially methylated CpG sites: a preliminary study using lymphoblastoid cell lines and peripheral blood samples of European and Chinese origin

nb

Candidate pop- CpGs

Genomic position (GRCh:37)

Locus

Gene region

Type of region

|Mav_diff|

q-value

1

cg18136963

chr6:139013146

FLJ49

not provided

N_Shore

2.950

0.0355

2

cg26367031

chr3:178984747

KCNMB3

5’UTR; 1st exon

not provided

2.775

0.0215

3

cg03140118

chr1:37939320

ZC3H12A

TSS1500

N_Shore

2.411

0.001

4

cg23669876

chr1: 36489276

AGO3

Body (LTR)

not provided

2.355

0.0039

5

cg00862290

chr3:178984973

KCNMB3

TSS200

S_Shore

2.247

0.008

6

cg08979191

chr5:132113734

SEPT8

TSS200

S_Shore

1.875

0.0185

7

cg24037715

chr14: 35203968

not provided

sea

1.691

0.0003

8

cg07207043

chr6:7051497

RREB1

not provided

CpG Island

1.534

0.0345

9

cg04036182

chr15:45458818

SHF

not provided

CpG Island

1.451

0.0201

10

cg00031303

chr3: 195681400

SDHAP1

not provided

CpG Island

1.359

0.005

11

cg07904028

chr4:6328508

PPP2R2C

body

not provided

1.257

0.0145

12

cg09972454

chr16: 15083088

PDXDC1

body

N_Shore

1.232

0.0029

13

cg24861686

chr8:11418058

BLK

body

N_Shelf

1.193

0.000

14

cg03585734

chr1: 15598865

FHAD1

body

not provided

1.123

0.0144

  1. CpGs selected for pyrosequencing validation are bolded. Shores and shelves are defined in Illumina as regions 0–2 kb and 2–4 kb, respectively, from a CpG island. N Upstream, S Downstream, TSS Transcription site start, LTR Long terminal region