|
PyroAssay number_ position of CpG in the assay
|
CEU (n)
|
CHB (n)
|
CEU.mean
|
CHB.mean
|
CEU.var
|
CHB.var
|
CEU.mean - CHB.mean
|
padj_beta
|
Pop_diff potential
|
|---|
|
1_CpG1
|
34
|
34
|
0.800
|
0.759
|
0.008
|
0.006
|
0.040
|
0.032
|
1
|
|
2_CpG1
|
34
|
34
|
0.243
|
0.252
|
0.052
|
0.040
|
−0.008
|
0.723
|
0
|
|
3_CpG1
|
34
|
34
|
0.246
|
0.222
|
0.069
|
0.051
|
0.024
|
0.828
|
0
|
|
3_CpG2
|
34
|
34
|
0.203
|
0.168
|
0.044
|
0.031
|
0.035
|
0.696
|
0
|
|
5_CpG1
|
34
|
34
|
0.718
|
0.594
|
0.057
|
0.041
|
0.124
|
0.049
|
1
|
|
5_CpG2
|
34
|
34
|
0.561
|
0.420
|
0.046
|
0.046
|
0.141
|
0.040
|
1
|
|
5_CpG3
|
34
|
34
|
0.522
|
0.448
|
0.064
|
0.049
|
0.074
|
0.319
|
0
|
|
6_CpG1
|
34
|
34
|
0.132
|
0.242
|
0.017
|
0.029
|
−0.110
|
0.007
|
1
|
|
6_CpG2
|
34
|
34
|
0.236
|
0.343
|
0.036
|
0.031
|
−0.107
|
0.018
|
1
|
|
8_CpG1
|
35
|
35
|
0.481
|
0.180
|
0.111
|
0.039
|
0.301
|
0.000
|
1
|
|
8_CpG2
|
35
|
35
|
0.492
|
0.166
|
0.125
|
0.050
|
0.325
|
0.000
|
1
|
|
8_CpG3
|
35
|
35
|
0.459
|
0.193
|
0.108
|
0.050
|
0.267
|
0.002
|
1
|
|
9_CpG1
|
34
|
34
|
0.713
|
0.806
|
0.042
|
0.035
|
−0.093
|
0.075
|
0
|
|
9_CpG2
|
34
|
34
|
0.632
|
0.772
|
0.035
|
0.021
|
−0.140
|
0.001
|
1
|
|
9_CpG3
|
34
|
34
|
0.657
|
0.784
|
0.049
|
0.030
|
−0.127
|
0.017
|
1
|
|
10_CpG1
|
30
|
31
|
0.146
|
0.561
|
0.035
|
0.055
|
−0.415
|
0.000
|
1
|
|
10_CpG2
|
30
|
31
|
0.171
|
0.640
|
0.043
|
0.062
|
−0.469
|
0.000
|
1
|
- CpG sites characterized by statistically significant inter-population differences in their methylation level are bolded. padj_beta: p-value after Benjamin Hochberg correction; pop-diff potential: differentiation potential of individual sites: 0-non-differentiating; 1-differentiating
