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Table 1 Samples and sequence data sets used in this study

From: Comparative analyses of copy number variations between Bos taurus and Bos indicus

Breeds

Subspecies

Location

Animal count

Coverage

CNV count

BioProject

Angus

Bos taurus

Europe

20

7–37×

34,774

PRJNA343262, PRJNA256210, PRJNA176557, PRJNA513064

Boran

Bos indicus

African

7

10–12×

27,996

PRJNA312138

Brahman

Bos indicus

Asian

4

17–19×

17,290

PRJNA432125

Gir

Bos indicus

Asian

3

7–15×

8787

PRJNA277147

Hereford

Bos taurus

Europe

12

8–17×

15,534

PRJNA343262, PRJNA176557

Kenana

Bos indicus

African

7

11×

29,291

PRJNA312138

Nelore

Bos indicus

Asian

6

6–10×

15,786

PRJNA507259, PRJNA277147

Ogaden

Bos indicus

African

7

10–12×

29,360

PRJNA312138

N’dama

Bos taurus

African

4

5–15×

1992

PRJNA604048

Muturu

Bos taurus

African

3

7–10×

2013

PRJNA604048

  1. Note: The data of N’dama and Muturu were newly generated. The data for other animals were downloaded from the NCBI database