Table 1 Comparative assessment of different P. pacificus gene annotations
Category | P. pacificus El Paco gene annotations | |
|---|---|---|
V2 | V3 | |
Number of genes | 28,036 | 28,896 |
Protein-coding sequence (Mb) | 35.3 | 35.3 |
BUSCO Completeness (%) | 97.1 | 97.6 |
BUSCO Duplicated (%) | 1.7 | 1.8 |
BUSCO Fragmented (%) | 2.0 | 2.0 |
BUSCO Missing (%) | 0.9 | 0.4 |
Number of 1–1 orthologs (BRHs) | 8348 | 8607 |
Number of 1–1 orthologs with variable protein length (%) | 532 | 265 |
Number of proteins with atypical domain combinations | 1589 | 1137 |
Number of protein family length outlier | 1388 | 1201 |