Table 1 Genome characteristics of strains of Colwellia compared in this study
From: Distinctive gene and protein characteristics of extremely piezophilic Colwellia
Strain | Isolation location | Isolation depth | Isolation source | Genome size (Mb) | DNA scaffold count | Completeness (%) | Contamination (%) | GC (%) | Coding region (%) | Predicted genes | Protein coding genes with function prediction | Most related strain (ANI) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
MTCD1 | Mariana Trench | 10,918 m | Amphipod | 4.37 | 184 | 100% | 1.47% | 39.34% | 83.68% | 3895 | 2826 | MT41; 99.2% |
MT41 | Mariana Trench | 10,476 m | Amphipod | 4.34 | 1 | 100% | 0.73% | 39.40% | 83.88% | 4057 | 2933 | MTCD1; 99.2% |
TT2012 | Tonga Trench | 9161 m | Sediment | 4.44 | 250 | 99.33% | 2.61% | 39.55% | 83.00% | 4071 | 2897 | MTCD1; 95.2% |
C. piezophila | Japan Trench | 6278 m | Sediment | 5.48 | 38 | 100% | 1.01% | 38.84% | 83.65% | 4598 | 3362 | TT2012; 82.8% |
GAB14E | Great Australian Bight | 1472 m | Water | 5.72 | 77 | 99.49% | 0.68% | 37.97% | 85.76% | 4790 | 3484 | TT2012; 82.4% |
ND2E | Mediterranean Sea | 495 m | Water | 5.15 | 57 | 100% | 2.38% | 38.08% | 85.73% | 4479 | 3379 | 34H; 85.7% |
34H | Arctic Ocean | 305 m | Sediment | 5.37 | 1 | 100% | 1.68% | 38.01% | 85.81% | 5066 | 3233 | ND2E; 85.7% |