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Table 4 Expression level of 12 genes encoding enzymes involved into sesquiterpenoid biosynthesis in F. filiformis

From: Genome-wide analysis and prediction of genes involved in the biosynthesis of polysaccharides and bioactive secondary metabolites in high-temperature-tolerant wild Flammulina filiformis

Gene ID

chromosome

length

wild_FB_FPKM

wild_primordia_FPKM

wild_MK_FPKM

wild_DK_FPKM

clutivar_DK_FPKM

log2ratio wild_DK/cultivar DK)

log2ratio wild_DK/MK

log2ratio wild FB/DK

log2ratio wild_FB/PD

log2 ratio wild PD/DK

Description

gene2785

Scaffold121

909

0.24

0.15

0.1

0.25

0.16

0.39

0.97

-0.02

0.2

-0.21

Trichodiene synthase

gene 1358

Scaffold78

1005

4.52

32.1

2.15

5.16

1.57

1.47

0.82

-0.15

-3.21

3.06

Linoleate 10R-lipoxygenase

gene1358-D2

Scaffold262

1005

45.38

48.94

124.54

82.53

38.31

0.86

-1.03

-0.82

-0.50

-0.32

Alpha-muurolene synthase

gene3100

Scaffold10

2559

66.43

69.62

104.75

95.85

80.55

0.01

-0.56

-0.49

-0.49

0.00

Hypothetic protein

gene1663-D2

Scaffold157

1035

1.87

0.17

1.34

0.27

3.49

-3.90

-2.72

2.89

3.10

-0.20

Delta(6)-protoilludene synthase

gene9115

Scaffold2

1038

111.29

4.54

2.69

21.74

10.70

0.77

2.59

2.37

4.17

-1.80

Delta(6)-protoilludene synthase

gene1140

Scaffold110

891

5.16

4.34

2.22

5.34

4.36

0.07

0.84

-0.03

-0.21

0.18

Trichodiene synthase

gene4450

Scaffold150

936

101.68

38.30

6.24

29.57

22.48

0.15

1.81

1.76

0.92

0.83

-

gene2254

Scaffold201

996

0.82

0.26

0.09

0.21

171.85

-9.93

0.71

2.04

1.25

0.79

Trichodiene synthase

gene10498-D2

Scaffold62

864

0.14

0.06

0.14

0.02

0.01

0.71

-3.10

2.65

0.75

1.89

-

gene9115-D2

Scaffold49

1038

87.98

3.11

3.31

23.40

16.45

0.25

2.40

1.93

4.39

-2.46

Delta(6)-protoilludene synthase

gene6325-D2

Scaffold61

1017

43.08

3.28

0.89

42.16

11.23

1.66

5.14

0.06

3.27

-3.21

Delta(6)-protoilludene synthase

  1. FPKM value is the mean expression value of three biological replicates
  2. black bont means genes significantly upregulated
  3. Abbreviation: MK monokaryontic mycelium, DK Dikaryontic mycelium, FB fruiting body, PD primordium