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Fig. 1 | BMC Genomics

Fig. 1

From: Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences

Fig. 1

Methods and results for predicting CLE genes. a Fold changes in the amino acid frequencies in CLE precursors and CLE motifs from 69 species. The amino acid composition of all proteins was used as a control (set to 1.0). The grey, aquamarine and lemon colored lines indicate all proteins, CLE precursors and CLE motifs, respectively. b Weight at each site of the CLE motif. c Score matrix of CLE motifs. The amino acids are indicated at the left using single letter codes. The numbers in the grid represent the score of each amino acid at sites 1 through 12. d Weblogo of the 12-residue CLE motif from the 1529 reported CLE genes [7]. e UpSet plot for visualizing the intersecting sets of CLE genes predicted by different methods. The number of CLE genes at each intersection was labeled in blue on the top of the appropriate column

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